Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC068831.4-201ENST00000556118 109 ntBASIC2.84□□□□□ -1.95
FOXA3P55318 TGIF1P1-201ENST00000558095 802 ntBASIC2.84□□□□□ -1.95
FOXA3P55318 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC2.84□□□□□ -1.95
FOXA3P55318 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.84□□□□□ -1.95
FOXA3P55318 AC006270.2-201ENST00000578523 652 ntBASIC2.84□□□□□ -1.95
FOXA3P55318 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXA3P55318 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC2.84□□□□□ -1.95
FOXA3P55318 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXA3P55318 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXA3P55318 MIR6862-1-201ENST00000613016 70 ntBASIC2.84□□□□□ -1.95
FOXA3P55318 MIR6862-2-201ENST00000614755 70 ntBASIC2.84□□□□□ -1.95
FOXA3P55318 AC016957.2-201ENST00000616998 848 ntBASIC2.84□□□□□ -1.95
FOXA3P55318 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC2.84□□□□□ -1.95
FOXA3P55318 AC092628.2-201ENST00000622492 339 ntBASIC2.84□□□□□ -1.95
FOXA3P55318 BANCR-201ENST00000624238 473 ntTSL 2 BASIC2.84□□□□□ -1.95
FOXA3P55318 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC2.84□□□□□ -1.95
FOXA3P55318 AC011944.2-201ENST00000624440 683 ntBASIC2.84□□□□□ -1.95
FOXA3P55318 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
FOXA3P55318 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC2.84□□□□□ -1.96
FOXA3P55318 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC2.84□□□□□ -1.96
FOXA3P55318 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
FOXA3P55318 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA3P55318 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA3P55318 AC091152.2-201ENST00000591628 2569 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA3P55318 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA3P55318 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA3P55318 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC2.83□□□□□ -1.96
FOXA3P55318 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 HSPE1P12-201ENST00000412576 301 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 RPL31P12-201ENST00000422587 358 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 OR5BE1P-201ENST00000425977 939 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 BTF3P10-201ENST00000433415 495 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 VN1R54P-201ENST00000435210 1049 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 CACYBPP1-201ENST00000438592 684 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 MRPS31P2-201ENST00000451581 518 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 AL513533.1-201ENST00000453728 415 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 MTND2P28-201ENST00000457540 1044 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 HMGB3P30-201ENST00000457863 606 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 RPL6P9-201ENST00000466502 859 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 RPS3AP50-201ENST00000487064 803 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA3P55318 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 AL035404.1-201ENST00000497982 568 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA3P55318 RNU2-58P-201ENST00000516403 183 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA3P55318 YPEL5P3-201ENST00000547227 352 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC2.83□□□□□ -1.96
FOXA3P55318 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA3P55318 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 AC234775.3-201ENST00000564612 656 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA3P55318 AC093765.1-201ENST00000603758 881 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA3P55318 FAM25E-202ENST00000608562 189 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 MIR6780A-201ENST00000615089 68 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 MIR8058-201ENST00000615737 89 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 AC100827.5-201ENST00000615883 426 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA3P55318 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA3P55318 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA3P55318 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA3P55318 OR5BE1P-202ENST00000641168 1176 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC2.83□□□□□ -1.96
FOXA3P55318 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
FOXA3P55318 AC138915.3-201ENST00000562908 1389 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA3P55318 RARSP1-201ENST00000542842 1418 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 AC024560.2-201ENST00000507981 1497 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 SAGE2P-201ENST00000420011 2126 ntBASIC2.83□□□□□ -1.96
FOXA3P55318 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA3P55318 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA3P55318 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA3P55318 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
FOXA3P55318 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA3P55318 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
FOXA3P55318 AL161909.1-201ENST00000397390 712 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 HMGB1P13-201ENST00000406019 642 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AC016397.1-201ENST00000412463 242 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AIMP1P1-201ENST00000418670 937 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA3P55318 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA3P55318 AC009965.2-201ENST00000425328 970 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA3P55318 HMGB3P8-201ENST00000449709 577 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 RPL21P11-201ENST00000461458 483 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 RN7SL329P-201ENST00000467740 299 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 AC074386.1-201ENST00000476560 767 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC2.82□□□□□ -1.96
FOXA3P55318 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA3P55318 RFESD-208ENST00000513950 464 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA3P55318 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 RNA5SP208-201ENST00000516156 78 ntBASIC2.82□□□□□ -1.96
FOXA3P55318 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms