Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-289P-201ENST00000364093 107 ntBASIC6.11□□□□□ -1.43
LIG3P49916 RNU6-769P-201ENST00000384407 104 ntBASIC6.11□□□□□ -1.43
LIG3P49916 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
LIG3P49916 DPPA2P2-201ENST00000418220 897 ntBASIC6.11□□□□□ -1.43
LIG3P49916 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.11□□□□□ -1.43
LIG3P49916 AC127526.2-201ENST00000426436 775 ntBASIC6.11□□□□□ -1.43
LIG3P49916 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.11□□□□□ -1.43
LIG3P49916 EIF5AP4-201ENST00000441206 465 ntBASIC6.11□□□□□ -1.43
LIG3P49916 CYCSP51-201ENST00000443545 318 ntBASIC6.11□□□□□ -1.43
LIG3P49916 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.11□□□□□ -1.43
LIG3P49916 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC6.11□□□□□ -1.43
LIG3P49916 MTCO1P42-201ENST00000457379 726 ntBASIC6.11□□□□□ -1.43
LIG3P49916 RPS3AP14-201ENST00000483907 780 ntBASIC6.11□□□□□ -1.43
LIG3P49916 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC6.11□□□□□ -1.43
LIG3P49916 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.11□□□□□ -1.43
LIG3P49916 ARL4AP2-201ENST00000507378 601 ntBASIC6.11□□□□□ -1.43
LIG3P49916 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.11□□□□□ -1.43
LIG3P49916 AC105914.1-201ENST00000511798 226 ntBASIC6.11□□□□□ -1.43
LIG3P49916 RN7SKP96-201ENST00000516948 297 ntBASIC6.11□□□□□ -1.43
LIG3P49916 RNA5SP340-201ENST00000517132 107 ntBASIC6.11□□□□□ -1.43
LIG3P49916 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC6.11□□□□□ -1.43
LIG3P49916 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC6.11□□□□□ -1.43
LIG3P49916 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC6.11□□□□□ -1.43
LIG3P49916 AK6P1-201ENST00000540219 478 ntBASIC6.11□□□□□ -1.43
LIG3P49916 MIR4660-201ENST00000583549 74 ntBASIC6.11□□□□□ -1.43
LIG3P49916 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.11□□□□□ -1.43
LIG3P49916 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.11□□□□□ -1.43
LIG3P49916 AL139286.1-201ENST00000604465 483 ntBASIC6.11□□□□□ -1.43
LIG3P49916 BCRP9-201ENST00000605312 388 ntBASIC6.11□□□□□ -1.43
LIG3P49916 AC009994.1-201ENST00000606889 253 ntBASIC6.11□□□□□ -1.43
LIG3P49916 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.11□□□□□ -1.43
LIG3P49916 MIR6861-201ENST00000618657 64 ntBASIC6.11□□□□□ -1.43
LIG3P49916 AC009033.1-201ENST00000624279 431 ntBASIC6.11□□□□□ -1.43
LIG3P49916 CR392039.4-201ENST00000624968 501 ntBASIC6.11□□□□□ -1.43
LIG3P49916 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC6.11□□□□□ -1.43
LIG3P49916 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.11□□□□□ -1.43
LIG3P49916 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.11□□□□□ -1.43
LIG3P49916 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
LIG3P49916 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
LIG3P49916 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
LIG3P49916 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.1□□□□□ -1.43
LIG3P49916 MT-TL1-201ENST00000386347 75 ntBASIC6.1□□□□□ -1.43
LIG3P49916 RNU6-780P-201ENST00000391030 104 ntBASIC6.1□□□□□ -1.43
LIG3P49916 PRRC2CP1-201ENST00000404428 159 ntBASIC6.1□□□□□ -1.43
LIG3P49916 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.1□□□□□ -1.43
LIG3P49916 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.1□□□□□ -1.43
LIG3P49916 PRELID3BP11-201ENST00000414230 479 ntBASIC6.1□□□□□ -1.43
LIG3P49916 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC6.1□□□□□ -1.43
LIG3P49916 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.1□□□□□ -1.43
LIG3P49916 RPL12P12-201ENST00000424633 501 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC6.1□□□□□ -1.43
LIG3P49916 RPL37P1-201ENST00000432310 284 ntBASIC6.1□□□□□ -1.43
LIG3P49916 RPL12P18-201ENST00000437175 325 ntBASIC6.1□□□□□ -1.43
LIG3P49916 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
LIG3P49916 FABP3P2-201ENST00000453169 399 ntBASIC6.1□□□□□ -1.43
LIG3P49916 HIGD1AP8-201ENST00000453927 274 ntBASIC6.1□□□□□ -1.43
LIG3P49916 BTF3P5-201ENST00000457252 467 ntBASIC6.1□□□□□ -1.43
LIG3P49916 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC6.1□□□□□ -1.43
LIG3P49916 AC012123.2-201ENST00000485809 248 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AC008628.2-201ENST00000502605 298 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AC025458.1-201ENST00000506046 166 ntBASIC6.1□□□□□ -1.43
LIG3P49916 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC6.1□□□□□ -1.43
LIG3P49916 RNU6-358P-201ENST00000516564 75 ntBASIC6.1□□□□□ -1.43
LIG3P49916 SOD1P3-201ENST00000518682 454 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AC018442.3-201ENST00000523025 183 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.1□□□□□ -1.43
LIG3P49916 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC6.1□□□□□ -1.43
LIG3P49916 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.1□□□□□ -1.43
LIG3P49916 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.1□□□□□ -1.43
LIG3P49916 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.1□□□□□ -1.43
LIG3P49916 SNORD39.3-201ENST00000584451 71 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AL049634.3-201ENST00000604968 457 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AC018695.5-201ENST00000605872 315 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AP003117.2-201ENST00000606010 545 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AL451049.1-201ENST00000608672 497 ntBASIC6.1□□□□□ -1.43
LIG3P49916 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC6.1□□□□□ -1.43
LIG3P49916 AC078899.5-201ENST00000612475 178 ntBASIC6.1□□□□□ -1.43
LIG3P49916 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC6.1□□□□□ -1.43
LIG3P49916 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC6.1□□□□□ -1.43
LIG3P49916 AC024884.1-201ENST00000620583 399 ntBASIC6.1□□□□□ -1.43
LIG3P49916 ABBA01000935.2-201ENST00000637477 838 ntBASIC6.1□□□□□ -1.43
LIG3P49916 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms