Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
MSX2P35548 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
MSX2P35548 SAMMSON-213ENST00000641336 1521 ntBASIC5.15□□□□□ -1.58
MSX2P35548 AC008033.1-201ENST00000216407 1162 ntBASIC5.15□□□□□ -1.59
MSX2P35548 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
MSX2P35548 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX2P35548 Y_RNA.61-201ENST00000362835 102 ntBASIC5.15□□□□□ -1.59
MSX2P35548 RNU6-1300P-201ENST00000391046 108 ntBASIC5.15□□□□□ -1.59
MSX2P35548 RNU6-248P-201ENST00000410720 107 ntBASIC5.15□□□□□ -1.59
MSX2P35548 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX2P35548 OR51A3P-201ENST00000413596 924 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AC114814.2-201ENST00000419195 485 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AC245054.1-201ENST00000420944 258 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX2P35548 AC079807.1-201ENST00000429993 481 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AL389925.1-201ENST00000432257 728 ntBASIC5.15□□□□□ -1.59
MSX2P35548 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX2P35548 AC092427.1-201ENST00000439177 601 ntBASIC5.15□□□□□ -1.59
MSX2P35548 RAB11AP1-201ENST00000442978 646 ntBASIC5.15□□□□□ -1.59
MSX2P35548 RPL7P36-201ENST00000444633 681 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AC114755.5-201ENST00000447760 831 ntBASIC5.15□□□□□ -1.59
MSX2P35548 MTCO1P48-201ENST00000448024 1096 ntBASIC5.15□□□□□ -1.59
MSX2P35548 Z99127.3-201ENST00000448158 395 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 AL450023.1-201ENST00000450868 751 ntBASIC5.15□□□□□ -1.59
MSX2P35548 MTND3P10-201ENST00000450967 341 ntBASIC5.15□□□□□ -1.59
MSX2P35548 HMGB1P4-201ENST00000455362 567 ntBASIC5.15□□□□□ -1.59
MSX2P35548 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC5.15□□□□□ -1.59
MSX2P35548 RN7SL254P-201ENST00000460609 284 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AL672167.3-201ENST00000465951 960 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX2P35548 AP000797.1-201ENST00000478870 387 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AC092989.1-201ENST00000481235 277 ntBASIC5.15□□□□□ -1.59
MSX2P35548 HMGN2P25-201ENST00000486956 268 ntBASIC5.15□□□□□ -1.59
MSX2P35548 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.15□□□□□ -1.59
MSX2P35548 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX2P35548 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.15□□□□□ -1.59
MSX2P35548 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.15□□□□□ -1.59
MSX2P35548 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX2P35548 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 RNY4P37-201ENST00000516225 96 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX2P35548 HMGN2P36-201ENST00000529541 409 ntBASIC5.15□□□□□ -1.59
MSX2P35548 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 AC084121.1-201ENST00000533882 835 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.15□□□□□ -1.59
MSX2P35548 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.15□□□□□ -1.59
MSX2P35548 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.15□□□□□ -1.59
MSX2P35548 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX2P35548 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX2P35548 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC5.15□□□□□ -1.59
MSX2P35548 AC090525.3-201ENST00000605601 189 ntBASIC5.15□□□□□ -1.59
MSX2P35548 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
MSX2P35548 AC025574.2-201ENST00000615621 514 ntBASIC5.15□□□□□ -1.59
MSX2P35548 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 AC018816.2-201ENST00000621460 353 ntBASIC5.15□□□□□ -1.59
MSX2P35548 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 HSPA8P14-201ENST00000552265 1805 ntBASIC5.15□□□□□ -1.59
MSX2P35548 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.15□□□□□ -1.59
MSX2P35548 AC063976.2-201ENST00000425667 3556 ntBASIC5.15□□□□□ -1.59
MSX2P35548 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.15□□□□□ -1.59
MSX2P35548 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.15□□□□□ -1.59
MSX2P35548 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX2P35548 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 AL354685.2-201ENST00000448218 1447 ntBASIC5.14□□□□□ -1.59
MSX2P35548 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX2P35548 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX2P35548 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
MSX2P35548 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.14□□□□□ -1.59
MSX2P35548 RNU5F-6P-201ENST00000362979 116 ntBASIC5.14□□□□□ -1.59
MSX2P35548 RNU5F-7P-201ENST00000363696 115 ntBASIC5.14□□□□□ -1.59
MSX2P35548 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 Y_RNA.450-201ENST00000384198 113 ntBASIC5.14□□□□□ -1.59
MSX2P35548 MTCYBP36-201ENST00000404146 440 ntBASIC5.14□□□□□ -1.59
MSX2P35548 RPL23AP47-201ENST00000408017 460 ntBASIC5.14□□□□□ -1.59
MSX2P35548 BX284632.2-201ENST00000421091 399 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC093698.1-201ENST00000423843 571 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.14□□□□□ -1.59
MSX2P35548 BX323845.3-201ENST00000428215 527 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX2P35548 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX2P35548 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX2P35548 AL512605.1-202ENST00000441919 381 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC244505.5-201ENST00000443639 207 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AL359955.2-201ENST00000445380 353 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX2P35548 AC097463.1-201ENST00000447288 481 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms