Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.93□□□□□ -1.46
HMGB1P09429 MTCYBP23-201ENST00000558717 1102 ntBASIC5.93□□□□□ -1.46
HMGB1P09429 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.93□□□□□ -1.46
HMGB1P09429 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.93□□□□□ -1.46
HMGB1P09429 AC087783.2-201ENST00000605070 562 ntBASIC5.93□□□□□ -1.46
HMGB1P09429 AP001521.1-201ENST00000609150 300 ntBASIC5.93□□□□□ -1.46
HMGB1P09429 AC010975.3-201ENST00000618727 978 ntBASIC5.93□□□□□ -1.46
HMGB1P09429 AL158163.2-201ENST00000619110 700 ntBASIC5.93□□□□□ -1.46
HMGB1P09429 AC040168.1-201ENST00000623594 991 ntBASIC5.93□□□□□ -1.46
HMGB1P09429 OR1S1-201ENST00000624470 978 ntBASIC5.93□□□□□ -1.46
HMGB1P09429 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.93□□□□□ -1.46
HMGB1P09429 AL590763.1-201ENST00000398297 1545 ntBASIC5.93□□□□□ -1.46
HMGB1P09429 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
HMGB1P09429 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
HMGB1P09429 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.92□□□□□ -1.46
HMGB1P09429 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC5.92□□□□□ -1.46
HMGB1P09429 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HMGB1P09429 Y_RNA.25-201ENST00000362528 102 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 RNA5SP258-201ENST00000362750 119 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 RNA5SP235-201ENST00000365411 114 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 Z75741.2-201ENST00000417272 1167 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AC007435.1-201ENST00000421086 415 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC5.92□□□□□ -1.46
HMGB1P09429 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.92□□□□□ -1.46
HMGB1P09429 AC093414.1-201ENST00000434712 514 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 TDGF1P1-201ENST00000445734 527 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.92□□□□□ -1.46
HMGB1P09429 TCEA1P1-201ENST00000449716 880 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 GYG1P1-201ENST00000460864 698 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 RN7SL517P-201ENST00000462240 305 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AC104164.2-201ENST00000496953 495 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC5.92□□□□□ -1.46
HMGB1P09429 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC5.92□□□□□ -1.46
HMGB1P09429 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.92□□□□□ -1.46
HMGB1P09429 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5.92□□□□□ -1.46
HMGB1P09429 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HMGB1P09429 AP006245.2-201ENST00000522004 300 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC5.92□□□□□ -1.46
HMGB1P09429 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.92□□□□□ -1.46
HMGB1P09429 OR4P1P-201ENST00000530808 1136 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.92□□□□□ -1.46
HMGB1P09429 AC092490.3-201ENST00000545370 572 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AL389895.1-201ENST00000554127 252 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 TRAV15-201ENST00000556680 249 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HMGB1P09429 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.92□□□□□ -1.46
HMGB1P09429 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.92□□□□□ -1.46
HMGB1P09429 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HMGB1P09429 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HMGB1P09429 AC023043.4-201ENST00000612081 449 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.92□□□□□ -1.46
HMGB1P09429 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.92□□□□□ -1.46
HMGB1P09429 AC112200.1-201ENST00000625015 234 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.92□□□□□ -1.46
HMGB1P09429 MIR4278-201ENST00000636094 69 ntBASIC5.92□□□□□ -1.46
HMGB1P09429 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
HMGB1P09429 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
HMGB1P09429 MARK2P15-201ENST00000432204 2186 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HMGB1P09429 AC018529.3-201ENST00000624212 2254 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HMGB1P09429 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HMGB1P09429 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
HMGB1P09429 LINC01355-201ENST00000566551 5444 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 RNU6-1249P-201ENST00000363237 111 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HMGB1P09429 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
HMGB1P09429 RNU6-171P-201ENST00000384354 107 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 RNU6-821P-201ENST00000390995 107 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AC092642.1-201ENST00000392417 425 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC5.91□□□□□ -1.46
HMGB1P09429 AL355433.1-201ENST00000422804 300 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC5.91□□□□□ -1.46
HMGB1P09429 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.91□□□□□ -1.46
HMGB1P09429 MRPS18BP2-201ENST00000434310 759 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.91□□□□□ -1.46
HMGB1P09429 ELOCP13-201ENST00000443934 329 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AL358794.1-201ENST00000445689 381 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.91□□□□□ -1.46
HMGB1P09429 AC104651.2-201ENST00000447549 528 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.91□□□□□ -1.46
HMGB1P09429 AL356981.1-201ENST00000454879 684 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 RPS18P6-201ENST00000476880 458 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.91□□□□□ -1.46
HMGB1P09429 AC010460.2-201ENST00000509054 677 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 RNU6-1073P-201ENST00000517182 106 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 RNU6-1261P-201ENST00000517194 104 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC5.91□□□□□ -1.46
HMGB1P09429 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC5.91□□□□□ -1.46
HMGB1P09429 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.91□□□□□ -1.46
HMGB1P09429 OR11J2P-201ENST00000555298 907 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.91□□□□□ -1.46
HMGB1P09429 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
HMGB1P09429 AL390838.2-201ENST00000602394 274 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AC069545.1-201ENST00000605671 358 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 MIR6862-1-201ENST00000613016 70 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 AC005332.6-201ENST00000613178 446 ntBASIC5.91□□□□□ -1.46
HMGB1P09429 MIR6862-2-201ENST00000614755 70 ntBASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms