Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CLDN3O15551 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.42□□□□□ -1.7
CLDN3O15551 MARK2P15-201ENST00000432204 2186 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
CLDN3O15551 GTF2H2B-203ENST00000508065 1432 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 RNA5SP479-201ENST00000364858 117 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 PPIAP31-201ENST00000405422 495 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 MIR1193-201ENST00000408109 78 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 RNU4-74P-201ENST00000411280 161 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.41□□□□□ -1.7
CLDN3O15551 RWDD4P2-201ENST00000426392 563 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC092017.2-201ENST00000427600 362 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 MTND4LP14-201ENST00000429447 288 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.41□□□□□ -1.7
CLDN3O15551 ELOCP8-201ENST00000439309 332 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AL353748.1-201ENST00000440753 474 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 ELOCP15-201ENST00000442090 332 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 RPL7P31-201ENST00000450192 724 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.41□□□□□ -1.7
CLDN3O15551 AC104687.1-201ENST00000485829 412 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 RN7SL271P-201ENST00000487601 295 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 RWDD4P1-201ENST00000488019 565 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC023050.1-201ENST00000498198 304 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.41□□□□□ -1.7
CLDN3O15551 AC111193.1-201ENST00000504097 155 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC010285.3-201ENST00000511668 676 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.41□□□□□ -1.7
CLDN3O15551 MTND1P6-201ENST00000523621 946 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 HAUS1P3-201ENST00000523909 662 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.41□□□□□ -1.7
CLDN3O15551 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.41□□□□□ -1.7
CLDN3O15551 AC106785.3-201ENST00000564064 847 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC079171.1-201ENST00000568788 914 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.41□□□□□ -1.7
CLDN3O15551 AC104662.1-201ENST00000604448 511 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC079791.1-201ENST00000605356 973 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 AC020658.4-201ENST00000613987 684 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLDN3O15551 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLDN3O15551 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLDN3O15551 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLDN3O15551 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLDN3O15551 MAPK10-253ENST00000641010 4072 ntBASIC4.41□□□□□ -1.7
CLDN3O15551 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.41□□□□□ -1.7
CLDN3O15551 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLDN3O15551 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLDN3O15551 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLDN3O15551 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLDN3O15551 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.4□□□□□ -1.7
CLDN3O15551 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLDN3O15551 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
CLDN3O15551 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
CLDN3O15551 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLDN3O15551 AL121834.1-202ENST00000404494 277 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 AL356967.1-201ENST00000406305 431 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.4□□□□□ -1.71
CLDN3O15551 RNU4-6P-201ENST00000410804 122 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 RNA5SP104-201ENST00000410989 118 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 AL450992.3-201ENST00000413192 568 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 AL691449.1-201ENST00000426570 421 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 FO393419.3-201ENST00000428741 282 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.4□□□□□ -1.71
CLDN3O15551 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.4□□□□□ -1.71
CLDN3O15551 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.4□□□□□ -1.71
CLDN3O15551 RPL21P89-201ENST00000444021 467 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.4□□□□□ -1.71
CLDN3O15551 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.4□□□□□ -1.71
CLDN3O15551 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.4□□□□□ -1.71
CLDN3O15551 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN3O15551 AC110792.1-201ENST00000491826 472 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 PRELID3BP7-201ENST00000503606 469 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.4□□□□□ -1.71
CLDN3O15551 AP002812.4-201ENST00000532139 286 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.4□□□□□ -1.71
CLDN3O15551 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.4□□□□□ -1.71
CLDN3O15551 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.4□□□□□ -1.71
CLDN3O15551 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.4□□□□□ -1.71
CLDN3O15551 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.4□□□□□ -1.71
CLDN3O15551 MIR4458-201ENST00000578872 75 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.4□□□□□ -1.71
CLDN3O15551 AC100814.1-201ENST00000606963 623 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 AC006042.3-201ENST00000454684 1469 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 PNPT1P2-201ENST00000456768 2050 ntBASIC4.4□□□□□ -1.71
CLDN3O15551 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN3O15551 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CLDN3O15551 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN3O15551 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN3O15551 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN3O15551 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN3O15551 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN3O15551 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.39□□□□□ -1.71
CLDN3O15551 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN3O15551 AL133412.1-201ENST00000380194 2992 ntBASIC4.39□□□□□ -1.71
CLDN3O15551 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN3O15551 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN3O15551 KPNA2P2-201ENST00000419546 1489 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms