Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 EI24P4-201ENST00000423683 1078 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AL031736.2-201ENST00000426573 787 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 MOB1AP1-201ENST00000430903 535 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 RPS29P9-201ENST00000440360 171 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC009127.1-201ENST00000467090 155 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC112206.1-201ENST00000468416 477 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 RNA5SP497-201ENST00000516081 97 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 SCARNA13-201ENST00000516672 275 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC084824.1-201ENST00000550917 1005 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 UBE2FP2-201ENST00000566646 462 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AL158211.1-201ENST00000566763 763 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC027455.1-201ENST00000574104 594 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC011453.2-201ENST00000603737 729 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AL392112.1-201ENST00000605115 829 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AL450336.1-201ENST00000605180 586 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC006386.1-201ENST00000619436 415 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC034229.5-201ENST00000624258 185 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 AC025125.1-201ENST00000624743 1922 ntBASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.07□□□□□ -1.76
PDLIM3Q53GG5 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 MTND4P10-201ENST00000446199 1363 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC005261.4-201ENST00000600047 1385 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 RNU1-64P-201ENST00000365443 163 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 Y_RNA.472-201ENST00000384322 102 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 RNU6-906P-201ENST00000384700 70 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 RNA5SP332-201ENST00000391063 115 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 RNU6-77P-201ENST00000410554 91 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 GJA6P-201ENST00000415117 1042 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 RPS12P5-201ENST00000423449 371 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL450023.3-201ENST00000440592 271 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC092809.1-201ENST00000441469 474 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL645939.1-201ENST00000453429 797 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 MRPL35P4-201ENST00000453682 566 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 PTGES3P5-201ENST00000455109 434 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 Z92846.1-201ENST00000456203 268 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 NAP1L1P3-201ENST00000462291 880 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 MTCO3P35-201ENST00000485582 781 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 RPS4XP20-201ENST00000505751 772 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 RNU6-416P-201ENST00000516265 103 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 RN7SKP82-201ENST00000516786 223 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 IGJP1-201ENST00000522682 475 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC021006.3-201ENST00000530771 192 ntBASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.06□□□□□ -1.76
PDLIM3Q53GG5 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms