Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 U6.48-201ENST00000618523 106 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP41Q3LFD5 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 MAPK10-286ENST00000641208 8747 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP41Q3LFD5 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 BX005019.1-201ENST00000561881 1810 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 ZNF29P-201ENST00000225587 168 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 RNU6-317P-201ENST00000384031 107 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 RNA5SP372-201ENST00000390836 115 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 RPS26P8-201ENST00000393490 348 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AL121834.1-202ENST00000404494 277 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 RN7SKP263-201ENST00000411194 309 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC009237.10-201ENST00000414112 510 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 RPL21P43-201ENST00000425440 472 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 CDY14P-201ENST00000431260 1014 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 CDY12P-201ENST00000440679 1015 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 CDY13P-201ENST00000445813 1015 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC068135.1-201ENST00000446164 246 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 RPL7L1P1-201ENST00000448259 785 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 CDY23P-201ENST00000451661 1014 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 STMN1P2-201ENST00000508435 439 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AP001207.2-201ENST00000519490 539 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 MTND2P32-201ENST00000521584 1038 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC090515.3-201ENST00000560431 315 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC113403.1-201ENST00000604910 193 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 AL023881.1-201ENST00000621088 301 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC005086.4-201ENST00000623065 213 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 MIR3653-201ENST00000625572 110 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 AC017104.4-201ENST00000636283 1592 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP41Q3LFD5 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.76□□□□□ -1.65
USP41Q3LFD5 EIF2AP4-201ENST00000424793 1781 ntBASIC4.76□□□□□ -1.65
USP41Q3LFD5 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP41Q3LFD5 LINC01109-201ENST00000603837 3081 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC008033.1-201ENST00000216407 1162 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP41Q3LFD5 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP41Q3LFD5 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 OR56B2P-201ENST00000317102 954 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP41Q3LFD5 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 MIR3065-201ENST00000390137 79 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 SNORA57.1-201ENST00000391227 145 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC092745.2-202ENST00000411880 369 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AL160275.2-201ENST00000412010 394 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AL449283.1-202ENST00000418249 604 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 USP9YP21-201ENST00000420603 432 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 EIF4EP1-201ENST00000422311 642 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 OSTCP5-201ENST00000425293 453 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AL031663.1-201ENST00000437445 219 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 TPTE2P6-202ENST00000445572 1007 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 RPS27AP17-201ENST00000463344 455 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC093752.1-206ENST00000511823 336 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 RNU6-1028P-201ENST00000517164 93 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC104417.1-201ENST00000523974 751 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AP003730.1-201ENST00000524605 285 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms