Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TPMTP4-201ENST00000450749 678 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 AC006967.1-201ENST00000467608 589 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 AL161747.1-201ENST00000480068 358 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 IGLV2-34-201ENST00000490007 283 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC5.5□□□□□ -1.53
SMARCA1P28370 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SMARCA1P28370 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC5.5□□□□□ -1.53
SMARCA1P28370 AC010306.1-201ENST00000523223 1117 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.5□□□□□ -1.53
SMARCA1P28370 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC5.5□□□□□ -1.53
SMARCA1P28370 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SMARCA1P28370 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SMARCA1P28370 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.5□□□□□ -1.53
SMARCA1P28370 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.5□□□□□ -1.53
SMARCA1P28370 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.5□□□□□ -1.53
SMARCA1P28370 AC116447.1-201ENST00000613153 453 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 AC009090.3-201ENST00000616553 565 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 MIR6853-201ENST00000619642 74 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 AC007671.2-201ENST00000637344 619 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SMARCA1P28370 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SMARCA1P28370 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.5□□□□□ -1.53
SMARCA1P28370 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SMARCA1P28370 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SMARCA1P28370 AL359922.3-201ENST00000624779 1670 ntBASIC5.5□□□□□ -1.53
SMARCA1P28370 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.49□□□□□ -1.53
SMARCA1P28370 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SMARCA1P28370 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SMARCA1P28370 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SMARCA1P28370 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.49□□□□□ -1.53
SMARCA1P28370 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SMARCA1P28370 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
SMARCA1P28370 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.49□□□□□ -1.53
SMARCA1P28370 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SMARCA1P28370 MIR92A2-201ENST00000385299 75 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AP000580.1-201ENST00000404439 358 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 RN7SKP267-201ENST00000410381 285 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 GSTM3P2-201ENST00000412746 530 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AL591848.1-201ENST00000413092 322 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.49□□□□□ -1.53
SMARCA1P28370 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC5.49□□□□□ -1.53
SMARCA1P28370 RPL7P57-201ENST00000423238 740 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AL009174.1-201ENST00000426577 416 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 CNOT7P1-201ENST00000429006 852 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 PPIAP13-201ENST00000434706 478 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 NMNAT1P2-201ENST00000435192 860 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC004938.1-201ENST00000438468 308 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AL117351.1-201ENST00000438864 766 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AL445567.1-201ENST00000439121 144 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.49□□□□□ -1.53
SMARCA1P28370 RPL23AP76-201ENST00000441860 458 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.49□□□□□ -1.53
SMARCA1P28370 HMGB1P48-201ENST00000446155 598 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC012512.1-201ENST00000446594 718 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.49□□□□□ -1.53
SMARCA1P28370 RHEBP2-201ENST00000450289 600 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC079776.3-201ENST00000450665 370 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.49□□□□□ -1.53
SMARCA1P28370 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.49□□□□□ -1.53
SMARCA1P28370 ANKRD26P4-201ENST00000455755 950 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC090686.1-201ENST00000481577 749 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC020890.1-201ENST00000491837 504 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC025164.1-201ENST00000496249 478 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SMARCA1P28370 OR5H4P-201ENST00000510851 923 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC008837.2-201ENST00000513076 418 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.49□□□□□ -1.53
SMARCA1P28370 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.49□□□□□ -1.53
SMARCA1P28370 OR4C2P-201ENST00000530855 1064 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC105129.1-201ENST00000560250 297 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC087465.1-201ENST00000560574 245 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AP005136.1-201ENST00000579765 429 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 MIR4270-201ENST00000581799 70 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.49□□□□□ -1.53
SMARCA1P28370 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.49□□□□□ -1.53
SMARCA1P28370 AC121247.2-201ENST00000604776 136 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.49□□□□□ -1.53
SMARCA1P28370 AL603755.1-201ENST00000619504 163 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.49□□□□□ -1.53
SMARCA1P28370 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.49□□□□□ -1.53
SMARCA1P28370 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SMARCA1P28370 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SMARCA1P28370 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.49□□□□□ -1.53
SMARCA1P28370 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SMARCA1P28370 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SMARCA1P28370 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
SMARCA1P28370 AC083843.3-201ENST00000623679 2186 ntBASIC5.49□□□□□ -1.53
SMARCA1P28370 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.48□□□□□ -1.53
SMARCA1P28370 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SMARCA1P28370 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SMARCA1P28370 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SMARCA1P28370 AC012618.3-205ENST00000637896 1496 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SMARCA1P28370 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SMARCA1P28370 AC079741.1-201ENST00000321498 212 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 RNU6-178P-201ENST00000384631 104 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 MIR585-201ENST00000384887 94 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 ATP5F1P3-201ENST00000397213 657 ntBASIC5.48□□□□□ -1.53
SMARCA1P28370 MIR298-201ENST00000401212 88 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms