Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL445984.1-201ENST00000637834 659 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC005261.4-201ENST00000600047 1385 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AL645568.2-201ENST00000432815 1337 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AL627171.1-201ENST00000618845 1308 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC008033.1-201ENST00000216407 1162 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 RNU5B-4P-201ENST00000363508 111 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 RNU6-304P-201ENST00000364855 107 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC048351.1-201ENST00000420064 602 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 RPS26P47-201ENST00000427219 348 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 ELOCP10-201ENST00000440624 327 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC239367.2-201ENST00000447309 705 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC104687.1-201ENST00000485829 412 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC005912.1-201ENST00000495392 255 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 RPS4XP18-201ENST00000495480 763 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 RNA5SP497-201ENST00000516081 97 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC134698.5-201ENST00000519444 336 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC010376.1-201ENST00000522101 334 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AP003730.1-201ENST00000524605 285 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC022882.1-201ENST00000532142 501 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC025884.1-201ENST00000556034 378 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 YWHAZP1-201ENST00000556286 722 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC095057.3-201ENST00000567102 1157 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC011492.1-201ENST00000600023 315 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 ELOCP34-201ENST00000604436 327 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC113403.1-201ENST00000604910 193 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC006946.3-201ENST00000609791 756 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC024595.1-201ENST00000623088 387 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AC015871.5-202ENST00000623252 701 ntBASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC3Q9BQI4 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 LINC00622-201ENST00000562811 1570 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC139769.1-204ENST00000472297 1931 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 ENSAP3-201ENST00000312710 333 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 RNU1-132P-201ENST00000364300 164 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 RNU6-178P-201ENST00000384631 104 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AL359643.1-201ENST00000404109 423 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AL512430.2-201ENST00000406786 339 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 LINC01881-201ENST00000416103 412 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 Z74021.1-201ENST00000423610 407 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 RPL23AP38-201ENST00000423801 469 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 HSFY1P1-201ENST00000423928 1178 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 OR5AW1P-201ENST00000426334 1006 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 HSFY3P-201ENST00000444242 1191 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC012671.1-201ENST00000451912 203 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 RPS27AP17-201ENST00000463344 455 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC041039.1-201ENST00000485656 536 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC010374.1-201ENST00000503762 1237 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC069306.1-201ENST00000507006 843 ntBASIC4.31□□□□□ -1.72
CCDC3Q9BQI4 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms