Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AL137845.2-201ENST00000444292 988 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.39□□□□□ -1.55
USP39Q53GS9 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.39□□□□□ -1.55
USP39Q53GS9 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC5.39□□□□□ -1.55
USP39Q53GS9 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC147055.4-201ENST00000504399 745 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 OR51K1P-201ENST00000510214 950 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.39□□□□□ -1.55
USP39Q53GS9 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.39□□□□□ -1.55
USP39Q53GS9 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC008837.2-201ENST00000513076 418 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 RN7SKP244-201ENST00000516513 307 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 RNU6-678P-201ENST00000516832 109 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 snoZ278.1-201ENST00000517059 112 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 NPM1P6-201ENST00000521088 871 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AP001646.1-201ENST00000527936 915 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC5.39□□□□□ -1.55
USP39Q53GS9 EDDM3DP-201ENST00000554692 434 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC011487.3-201ENST00000593607 453 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC009597.2-201ENST00000604659 592 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC004009.2-201ENST00000623016 728 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC109454.4-201ENST00000623411 649 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC091905.4-201ENST00000623432 202 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC135068.5-201ENST00000624197 983 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC016717.3-201ENST00000624730 554 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC099654.14-201ENST00000638599 341 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
USP39Q53GS9 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.39□□□□□ -1.55
USP39Q53GS9 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
USP39Q53GS9 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
USP39Q53GS9 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
USP39Q53GS9 AC012618.3-205ENST00000637896 1496 ntBASIC5.39□□□□□ -1.55
USP39Q53GS9 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP39Q53GS9 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP39Q53GS9 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AC092681.1-201ENST00000297369 291 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 RNA5SP123-201ENST00000363244 119 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 SNORA51.8-201ENST00000384234 132 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 SNORD65-201ENST00000391079 73 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP39Q53GS9 DNAJC19P6-201ENST00000401853 280 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 VTA1P1-201ENST00000414044 866 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 ATG4AP1-201ENST00000416893 538 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AL807761.1-201ENST00000417622 171 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 PAICSP7-201ENST00000419829 962 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AC004448.2-201ENST00000422360 586 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.38□□□□□ -1.55
USP39Q53GS9 MED14P1-201ENST00000430517 648 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 NDUFB4P8-201ENST00000435351 367 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AC091862.1-201ENST00000438016 1100 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 MTND1P30-201ENST00000441241 901 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 RPL23AP76-201ENST00000441860 458 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 SNRPGP9-201ENST00000456025 225 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 snoU13.20-201ENST00000459180 104 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 RPSAP51-201ENST00000497462 645 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.38□□□□□ -1.55
USP39Q53GS9 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AC117522.1-201ENST00000509821 380 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC5.38□□□□□ -1.55
USP39Q53GS9 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AC104383.1-201ENST00000530297 370 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AP004607.2-201ENST00000533949 322 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AC074029.1-201ENST00000552531 1044 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC5.38□□□□□ -1.55
USP39Q53GS9 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
USP39Q53GS9 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.38□□□□□ -1.55
USP39Q53GS9 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.38□□□□□ -1.55
USP39Q53GS9 EIF1P6-201ENST00000600054 334 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC5.38□□□□□ -1.55
USP39Q53GS9 AC069545.1-201ENST00000605671 358 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 AC092954.2-201ENST00000609103 430 ntBASIC5.38□□□□□ -1.55
USP39Q53GS9 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms