Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC087359.1-201ENST00000508335 1740 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC093775.1-201ENST00000624154 1868 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC134882.1-201ENST00000603738 1676 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 SNURFL-201ENST00000309296 343 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 Y_RNA.436-201ENST00000384097 102 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 SNORD116-23-201ENST00000384645 92 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 MIR585-201ENST00000384887 94 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 RN7SKP114-201ENST00000410327 279 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 GSTM3P2-201ENST00000412746 530 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC234782.4-201ENST00000417646 1048 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 BX323845.1-201ENST00000432417 179 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 TCEA1P3-201ENST00000443005 880 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC004980.3-201ENST00000447046 365 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 RPL7P59-201ENST00000447700 943 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 MTCO2P18-201ENST00000457151 658 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC005178.1-201ENST00000508392 440 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC109471.1-201ENST00000511631 612 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AP000676.2-201ENST00000529711 301 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 NDUFB4P11-201ENST00000560510 395 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 SULT1C2P2-201ENST00000562517 294 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 MTCYBP28-201ENST00000566728 1132 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC011447.4-201ENST00000587562 111 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 HULC.1-201ENST00000612720 240 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC098679.4-201ENST00000624241 654 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 AC092162.3-201ENST00000624511 1624 ntBASIC4.94□□□□□ -1.62
PTCHD3Q3KNS1 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 RNU6-582P-201ENST00000362989 107 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 RNA5SP455-201ENST00000365190 119 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AL109941.1-201ENST00000401925 229 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AL031577.2-201ENST00000404133 280 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AL021407.1-201ENST00000404531 386 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AL139098.1-201ENST00000407291 389 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 TPT1P2-201ENST00000413105 503 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 BTF3L4P1-201ENST00000413813 468 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 SKP1P3-201ENST00000429280 487 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 MTND1P20-201ENST00000430341 950 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 PPIAP13-201ENST00000434706 478 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC096638.2-201ENST00000434965 711 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 VN1R54P-201ENST00000435210 1049 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AL591363.1-201ENST00000450091 483 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 RPL21P71-201ENST00000465598 459 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 RPL7P1-201ENST00000468161 747 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 RPL7P9-201ENST00000468715 747 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC104689.1-201ENST00000473356 768 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms