Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC6.06□□□□□ -1.44
CUX1P39880 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC6.06□□□□□ -1.44
CUX1P39880 AL035458.1-201ENST00000433096 585 ntBASIC6.06□□□□□ -1.44
CUX1P39880 NDUFB1P1-201ENST00000435191 180 ntBASIC6.06□□□□□ -1.44
CUX1P39880 AC091862.1-201ENST00000438016 1100 ntBASIC6.06□□□□□ -1.44
CUX1P39880 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CUX1P39880 OR5AC4P-202ENST00000642086 985 ntBASIC6.06□□□□□ -1.44
CUX1P39880 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CUX1P39880 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CUX1P39880 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC6.06□□□□□ -1.44
CUX1P39880 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CUX1P39880 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
CUX1P39880 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
CUX1P39880 AC007685.1-201ENST00000329806 452 ntBASIC6.05□□□□□ -1.44
CUX1P39880 RN7SKP53-201ENST00000411337 315 ntBASIC6.05□□□□□ -1.44
CUX1P39880 HMGB3P20-201ENST00000417997 600 ntBASIC6.05□□□□□ -1.44
CUX1P39880 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC6.05□□□□□ -1.44
CUX1P39880 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC6.05□□□□□ -1.44
CUX1P39880 RPL37P3-201ENST00000456825 293 ntBASIC6.05□□□□□ -1.44
CUX1P39880 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CUX1P39880 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC6.05□□□□□ -1.44
CUX1P39880 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CUX1P39880 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC6.05□□□□□ -1.44
CUX1P39880 AC024224.1-201ENST00000538284 609 ntBASIC6.05□□□□□ -1.44
CUX1P39880 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC6.05□□□□□ -1.44
CUX1P39880 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC6.05□□□□□ -1.44
CUX1P39880 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC6.05□□□□□ -1.44
CUX1P39880 U4.6-201ENST00000621618 127 ntBASIC6.05□□□□□ -1.44
CUX1P39880 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CUX1P39880 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CUX1P39880 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CUX1P39880 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC6.05□□□□□ -1.44
CUX1P39880 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
CUX1P39880 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CUX1P39880 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC6.04□□□□□ -1.44
CUX1P39880 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC6.04□□□□□ -1.44
CUX1P39880 RSL24D1P3-201ENST00000449255 495 ntBASIC6.04□□□□□ -1.44
CUX1P39880 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC6.04□□□□□ -1.44
CUX1P39880 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC6.04□□□□□ -1.44
CUX1P39880 UBTFL9-201ENST00000534504 1148 ntBASIC6.04□□□□□ -1.44
CUX1P39880 EIF4BP1-201ENST00000554881 351 ntBASIC6.04□□□□□ -1.44
CUX1P39880 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC6.04□□□□□ -1.44
CUX1P39880 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CUX1P39880 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CUX1P39880 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC6.04□□□□□ -1.44
CUX1P39880 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CUX1P39880 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CUX1P39880 BDP1P-201ENST00000582658 1990 ntBASIC6.04□□□□□ -1.44
CUX1P39880 AL442128.2-201ENST00000620246 1824 ntBASIC6.04□□□□□ -1.44
CUX1P39880 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC6.04□□□□□ -1.44
CUX1P39880 RN7SKP97-201ENST00000410966 333 ntBASIC6.04□□□□□ -1.44
CUX1P39880 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC6.04□□□□□ -1.44
CUX1P39880 AJ239321.1-201ENST00000424255 564 ntBASIC6.04□□□□□ -1.44
CUX1P39880 IGKV1OR9-2-201ENST00000431378 277 ntBASIC6.04□□□□□ -1.44
CUX1P39880 TPTE2P3-201ENST00000441562 1189 ntBASIC6.04□□□□□ -1.44
CUX1P39880 U3.44-201ENST00000458938 192 ntBASIC6.04□□□□□ -1.44
CUX1P39880 RPL32P34-201ENST00000486380 400 ntBASIC6.04□□□□□ -1.44
CUX1P39880 TRAV15-201ENST00000556680 249 ntBASIC6.04□□□□□ -1.44
CUX1P39880 MIR5004-201ENST00000579078 107 ntBASIC6.04□□□□□ -1.44
CUX1P39880 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
CUX1P39880 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.03□□□□□ -1.44
CUX1P39880 IPO8P1-201ENST00000455509 3109 ntBASIC6.03□□□□□ -1.44
CUX1P39880 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC6.03□□□□□ -1.44
CUX1P39880 AC069285.2-201ENST00000440210 275 ntBASIC6.03□□□□□ -1.44
CUX1P39880 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC6.03□□□□□ -1.44
CUX1P39880 AC073522.1-201ENST00000483312 377 ntBASIC6.03□□□□□ -1.44
CUX1P39880 RPL23AP94-201ENST00000512518 302 ntBASIC6.03□□□□□ -1.44
CUX1P39880 RN7SKP289-201ENST00000517244 295 ntBASIC6.03□□□□□ -1.44
CUX1P39880 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC6.03□□□□□ -1.44
CUX1P39880 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC6.03□□□□□ -1.44
CUX1P39880 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC6.03□□□□□ -1.44
CUX1P39880 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC6.03□□□□□ -1.44
CUX1P39880 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CUX1P39880 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CUX1P39880 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
CUX1P39880 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC6.02□□□□□ -1.45
CUX1P39880 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC6.02□□□□□ -1.45
CUX1P39880 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CUX1P39880 BX323014.1-201ENST00000412876 237 ntBASIC6.02□□□□□ -1.45
CUX1P39880 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC6.02□□□□□ -1.45
CUX1P39880 ARL4AP1-201ENST00000503220 705 ntBASIC6.02□□□□□ -1.45
CUX1P39880 AC005476.1-201ENST00000554427 397 ntBASIC6.02□□□□□ -1.45
CUX1P39880 AC012603.1-201ENST00000606424 528 ntBASIC6.02□□□□□ -1.45
CUX1P39880 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
CUX1P39880 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CUX1P39880 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CUX1P39880 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CUX1P39880 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CUX1P39880 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CUX1P39880 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.01□□□□□ -1.45
CUX1P39880 RNU6-1279P-201ENST00000383917 103 ntBASIC6.01□□□□□ -1.45
CUX1P39880 EIF4EP1-201ENST00000422311 642 ntBASIC6.01□□□□□ -1.45
CUX1P39880 RPF2P1-201ENST00000424137 906 ntBASIC6.01□□□□□ -1.45
CUX1P39880 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC6.01□□□□□ -1.45
CUX1P39880 AC093524.1-201ENST00000564266 1094 ntBASIC6.01□□□□□ -1.45
CUX1P39880 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC6.01□□□□□ -1.45
CUX1P39880 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC6.01□□□□□ -1.45
CUX1P39880 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC6.01□□□□□ -1.45
CUX1P39880 AC128687.2-201ENST00000609657 566 ntBASIC6.01□□□□□ -1.45
CUX1P39880 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms