Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 AL512329.1-201ENST00000404600 1592 ntBASIC6.25□□□□□ -1.41
MSX1P28360 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
MSX1P28360 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 ZNF402P-201ENST00000404435 3100 ntBASIC6.25□□□□□ -1.41
MSX1P28360 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 MFF-206ENST00000392059 1710 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.25□□□□□ -1.41
MSX1P28360 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.25□□□□□ -1.41
MSX1P28360 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 AL033543.1-201ENST00000623440 13454 ntBASIC6.24□□□□□ -1.41
MSX1P28360 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
MSX1P28360 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX1P28360 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
MSX1P28360 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 MKI67P1-201ENST00000604297 1460 ntBASIC6.24□□□□□ -1.41
MSX1P28360 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 AL161781.1-201ENST00000354277 403 ntBASIC6.24□□□□□ -1.41
MSX1P28360 RNA5SP65-201ENST00000363166 119 ntBASIC6.24□□□□□ -1.41
MSX1P28360 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX1P28360 Y_RNA.482-201ENST00000384377 111 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AL139397.2-201ENST00000404529 772 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AP000534.2-201ENST00000412729 568 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX1P28360 AL139396.1-201ENST00000421137 167 ntBASIC6.24□□□□□ -1.41
MSX1P28360 SPATA20P1-201ENST00000423089 438 ntBASIC6.24□□□□□ -1.41
MSX1P28360 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX1P28360 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX1P28360 AL031663.1-201ENST00000437445 219 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 RN7SL834P-201ENST00000461450 286 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AC083806.1-201ENST00000468934 316 ntBASIC6.24□□□□□ -1.41
MSX1P28360 RN7SL216P-201ENST00000471607 298 ntBASIC6.24□□□□□ -1.41
MSX1P28360 RN7SL654P-201ENST00000479178 292 ntBASIC6.24□□□□□ -1.41
MSX1P28360 ALDH7A1P3-201ENST00000492517 345 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 RNU6-635P-201ENST00000516651 102 ntBASIC6.24□□□□□ -1.41
MSX1P28360 RN7SKP70-201ENST00000516655 271 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX1P28360 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC6.24□□□□□ -1.41
MSX1P28360 OR52K3P-201ENST00000531655 943 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AP000857.1-201ENST00000532151 543 ntBASIC6.24□□□□□ -1.41
MSX1P28360 RPL21P12-201ENST00000559810 515 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX1P28360 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 MIR378C-201ENST00000578683 81 ntBASIC6.24□□□□□ -1.41
MSX1P28360 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
MSX1P28360 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 AL513327.3-201ENST00000602618 469 ntBASIC6.24□□□□□ -1.41
MSX1P28360 RPS4XP21-201ENST00000603814 750 ntBASIC6.24□□□□□ -1.41
MSX1P28360 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 U1.34-201ENST00000618578 162 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AC131009.3-201ENST00000621809 287 ntBASIC6.24□□□□□ -1.41
MSX1P28360 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.24□□□□□ -1.41
MSX1P28360 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.24□□□□□ -1.41
MSX1P28360 AL354702.2-202ENST00000641481 890 ntBASIC6.24□□□□□ -1.41
MSX1P28360 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
MSX1P28360 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSX1P28360 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 HSPA8P18-201ENST00000439846 1928 ntBASIC6.23□□□□□ -1.41
MSX1P28360 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
MSX1P28360 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
MSX1P28360 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSX1P28360 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms