Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR4637-201ENST00000582405 84 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC092794.1-201ENST00000612734 582 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AP000648.2-201ENST00000624182 404 ntBASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TRIM39Q9HCM9 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RNU5F-6P-201ENST00000362979 116 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RNU6-249P-201ENST00000363016 102 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RNA5SP242-201ENST00000364171 118 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RNU6-441P-201ENST00000384545 106 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC092642.1-201ENST00000392417 425 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RNU6ATAC25P-201ENST00000408798 117 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AL133325.1-201ENST00000421090 382 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RPS27AP7-201ENST00000422792 455 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC096632.1-201ENST00000427395 310 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 MTND1P28-201ENST00000435623 950 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 YWHAZP8-201ENST00000436935 731 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC006335.2-201ENST00000437993 330 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 PDSS1P2-201ENST00000449397 678 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AL450023.1-201ENST00000450868 751 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 NDUFAF4P4-201ENST00000454883 502 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC011825.1-201ENST00000484967 388 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC025881.1-201ENST00000518851 512 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 ZNF705CP-201ENST00000530515 889 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC137627.1-201ENST00000545761 289 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 OR6C73P-201ENST00000546432 358 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 MIR1273E-201ENST00000581165 102 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC005771.1-201ENST00000585581 349 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 RBM11P1-201ENST00000604951 799 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC104695.2-201ENST00000605056 775 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC078899.5-201ENST00000612475 178 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 U6atac.1-201ENST00000616025 117 ntBASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM39Q9HCM9 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AL034370.1-201ENST00000397254 1590 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 AC009962.1-201ENST00000567327 3813 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 GAPDHP24-201ENST00000328713 983 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 MIR649-201ENST00000384843 97 ntBASIC5.55□□□□□ -1.52
TRIM39Q9HCM9 MIR143-201ENST00000385300 106 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms