Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL596275.2-204ENST00000641628 552 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL596275.2-206ENST00000641957 626 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 PLGLA-201ENST00000465668 449 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 DEFB109F-201ENST00000491870 277 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 TCP11X3P-202ENST00000514289 1254 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 ELOCP35-201ENST00000604289 336 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 YPEL5P2-201ENST00000605553 359 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AL353684.1-201ENST00000622677 1120 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RNA5SP513-201ENST00000364648 118 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 SNORD96B-201ENST00000386148 79 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC002524.1-201ENST00000411687 547 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AL512649.1-201ENST00000428997 581 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 SKP1P3-201ENST00000429280 487 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AL133547.1-201ENST00000448546 220 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 OR10D4P-201ENST00000525892 951 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AL442067.2-201ENST00000614033 363 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AL353726.1-201ENST00000614041 1000 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC015967.1-201ENST00000619893 476 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC000123.3-201ENST00000624029 4975 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RPL7P60-201ENST00000397636 735 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AL122016.1-201ENST00000403365 367 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AL031121.1-201ENST00000406553 254 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AP000357.1-201ENST00000409926 1165 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC007599.1-201ENST00000568688 1174 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AL713922.2-201ENST00000619384 716 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC233263.6-201ENST00000631132 1963 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RNA5SP22-201ENST00000365393 109 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RPL7L1P1-201ENST00000448259 785 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RPL23AP12-201ENST00000467573 473 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 FTH1P9-201ENST00000513251 355 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 TBCA-203ENST00000517679 545 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RPL21P7-201ENST00000557463 483 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 GTF2IP8-201ENST00000560687 584 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 PTER-201ENST00000298942 3448 ntTSL 5 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 BMS1P3-201ENST00000372011 932 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 MTND6P6-201ENST00000478031 263 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 PCNP-208ENST00000627393 136 ntTSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC008079.2-201ENST00000623543 20396 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC093535.2-201ENST00000624769 2326 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RPS4XP10-201ENST00000465034 731 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RPL29P14-201ENST00000495837 428 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC010486.1-201ENST00000511793 424 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC008694.2-201ENST00000517591 306 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 IGLV3-26-201ENST00000520756 302 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC007066.2-202ENST00000566531 914 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC233280.2-201ENST00000603917 1070 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 MIR7111-201ENST00000619751 72 ntBASIC1.19□□□□□ -2.22
SYNE1Q8NF91 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
SYNE1Q8NF91 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms