Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SCN4AP35499 Z95331.1-201ENST00000623075 23112 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SCN4AP35499 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 SNORA48.5-201ENST00000391143 135 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 HDGFP1-201ENST00000405943 252 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC4.55□□□□□ -1.68
SCN4AP35499 GEMIN8P3-201ENST00000445417 720 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 PSMC1P13-201ENST00000458195 985 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 MTND1P6-201ENST00000523621 946 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.55□□□□□ -1.68
SCN4AP35499 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.55□□□□□ -1.68
SCN4AP35499 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.55□□□□□ -1.68
SCN4AP35499 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.55□□□□□ -1.68
SCN4AP35499 AC107993.1-201ENST00000591343 684 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 AC116312.1-201ENST00000606841 314 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 AL122125.1-201ENST00000616999 600 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SCN4AP35499 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC4.55□□□□□ -1.68
SCN4AP35499 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 AL672167.1-203ENST00000641299 2975 ntBASIC4.55□□□□□ -1.68
SCN4AP35499 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.55□□□□□ -1.68
SCN4AP35499 AC068254.2-201ENST00000623938 3577 ntBASIC4.54□□□□□ -1.68
SCN4AP35499 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.54□□□□□ -1.68
SCN4AP35499 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
SCN4AP35499 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.54□□□□□ -1.68
SCN4AP35499 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.54□□□□□ -1.68
SCN4AP35499 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SCN4AP35499 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SCN4AP35499 SNORD9-201ENST00000362566 104 ntBASIC4.54□□□□□ -1.68
SCN4AP35499 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SCN4AP35499 SOD2P1-201ENST00000396543 562 ntBASIC4.54□□□□□ -1.68
SCN4AP35499 MIR1251-201ENST00000408552 70 ntBASIC4.54□□□□□ -1.68
SCN4AP35499 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SCN4AP35499 AC017083.1-201ENST00000428093 483 ntBASIC4.54□□□□□ -1.68
SCN4AP35499 AC073063.1-201ENST00000434352 607 ntBASIC4.54□□□□□ -1.68
SCN4AP35499 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.54□□□□□ -1.68
SCN4AP35499 SNORD105B-201ENST00000458770 79 ntBASIC4.54□□□□□ -1.68
SCN4AP35499 FTH1P9-201ENST00000513251 355 ntBASIC4.54□□□□□ -1.68
SCN4AP35499 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.54□□□□□ -1.68
SCN4AP35499 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.54□□□□□ -1.68
SCN4AP35499 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.54□□□□□ -1.68
SCN4AP35499 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SCN4AP35499 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.54□□□□□ -1.68
SCN4AP35499 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SCN4AP35499 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.54□□□□□ -1.68
SCN4AP35499 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.54□□□□□ -1.68
SCN4AP35499 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SCN4AP35499 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.53□□□□□ -1.68
SCN4AP35499 AJ239321.1-201ENST00000424255 564 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 AC006517.1-201ENST00000480485 328 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC113430.1-201ENST00000506872 718 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 AC010342.1-201ENST00000514047 877 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC010680.3-201ENST00000604215 520 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.53□□□□□ -1.68
SCN4AP35499 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
SCN4AP35499 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SCN4AP35499 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SCN4AP35499 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.53□□□□□ -1.68
SCN4AP35499 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC004944.1-201ENST00000517807 3059 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 MTND4P26-201ENST00000415971 1359 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 RNA5SP52-201ENST00000362448 134 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SCN4AP35499 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.53□□□□□ -1.68
SCN4AP35499 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.53□□□□□ -1.68
SCN4AP35499 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC073335.1-201ENST00000427776 363 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC069306.1-201ENST00000507006 843 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 PPBPP1-201ENST00000510807 373 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 RNA5SP154-201ENST00000516193 111 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 AC008802.1-201ENST00000519121 791 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 IGHV3-32-201ENST00000519182 355 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.53□□□□□ -1.68
SCN4AP35499 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.53□□□□□ -1.68
SCN4AP35499 AC138907.10-201ENST00000623708 983 ntBASIC4.53□□□□□ -1.68
SCN4AP35499 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.52□□□□□ -1.69
SCN4AP35499 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.52□□□□□ -1.69
SCN4AP35499 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.52□□□□□ -1.69
SCN4AP35499 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
SCN4AP35499 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.52□□□□□ -1.69
SCN4AP35499 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms