Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 MIR122-201ENST00000385044 85 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXD4P09016 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 NCSTNP1-201ENST00000406229 144 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AL603766.1-201ENST00000407763 664 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 RN7SKP222-201ENST00000410651 315 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AL024507.1-201ENST00000412741 274 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD4P09016 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 AL606495.1-201ENST00000422100 813 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 RPL7AP25-201ENST00000423357 805 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 MTCO3P21-201ENST00000430791 643 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AC011242.1-201ENST00000433596 1158 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD4P09016 MTCYBP12-201ENST00000440559 1134 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 CDC27P1-201ENST00000445384 715 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD4P09016 RPL23AP23-201ENST00000452590 471 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 AC108120.2-201ENST00000512973 294 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 MTCO1P35-201ENST00000515270 228 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 HNRNPKP5-201ENST00000515300 253 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 MIR2116-201ENST00000517221 80 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD4P09016 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD4P09016 AC100770.1-201ENST00000532310 322 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXD4P09016 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD4P09016 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXD4P09016 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD4P09016 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD4P09016 VN1R85P-201ENST00000601587 426 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AC068620.3-201ENST00000602749 560 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AC027449.1-201ENST00000608890 407 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AC090912.3-201ENST00000609775 533 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD4P09016 AC114781.5-201ENST00000615297 108 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 AL445984.1-201ENST00000637834 659 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD4P09016 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
HOXD4P09016 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
HOXD4P09016 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
HOXD4P09016 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD4P09016 PHKBP1-201ENST00000450951 1951 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD4P09016 AC009313.2-201ENST00000417893 1941 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXD4P09016 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD4P09016 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD4P09016 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD4P09016 HSPD1P11-201ENST00000508643 1702 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 RNU6-1000P-201ENST00000391066 106 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD4P09016 RPL23AP59-201ENST00000399415 461 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 MTATP6P31-201ENST00000406985 692 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC011933.1-201ENST00000413334 321 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD4P09016 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD4P09016 YWHAEP5-201ENST00000431545 765 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD4P09016 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD4P09016 NUTF2P3-201ENST00000448540 384 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AL935212.3-201ENST00000450729 284 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD4P09016 RPL7AP52-201ENST00000458096 790 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC116533.1-201ENST00000459748 321 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 RPS20P4-201ENST00000461659 355 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC053481.1-201ENST00000467217 306 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD4P09016 SUMO1P1-201ENST00000497904 306 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 PRELID3BP7-201ENST00000503606 469 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC139783.2-201ENST00000504847 1145 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD4P09016 AC121161.1-201ENST00000510606 652 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD4P09016 AC104115.2-201ENST00000523026 687 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.05□□□□□ -1.76
HOXD4P09016 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD4P09016 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.05□□□□□ -1.76
HOXD4P09016 AC087477.6-201ENST00000559595 843 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXD4P09016 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXD4P09016 AC011477.5-201ENST00000586571 259 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXD4P09016 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXD4P09016 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXD4P09016 AC067959.1-201ENST00000604334 379 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC026741.1-201ENST00000605892 482 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC112503.2-201ENST00000609005 552 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AP003485.1-201ENST00000625093 753 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 AC004808.1-201ENST00000627671 721 ntBASIC4.05□□□□□ -1.76
HOXD4P09016 OR4G3P-201ENST00000633500 913 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms