Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS39Q96JC1 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS39Q96JC1 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 SNORA70E-201ENST00000384492 135 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 MIR3074-201ENST00000384885 81 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AL160275.2-201ENST00000412010 394 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 ARL2BPP10-201ENST00000446487 531 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC073264.2-201ENST00000448886 166 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 FTH1P9-201ENST00000513251 355 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 OR5M7P-201ENST00000526140 972 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC115286.1-201ENST00000604298 434 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 MIR432-201ENST00000606207 94 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC116651.1-201ENST00000609724 556 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AC078899.5-201ENST00000612475 178 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AL354696.1-201ENST00000614652 497 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 AL021997.2-201ENST00000615674 271 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS39Q96JC1 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS39Q96JC1 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS39Q96JC1 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC017007.4-201ENST00000503353 1352 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS39Q96JC1 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS39Q96JC1 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS39Q96JC1 RAD1P1-201ENST00000231383 813 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC103591.2-201ENST00000265259 766 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 MIR448-201ENST00000362131 111 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 RPS16P5-201ENST00000406501 404 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AL590139.1-201ENST00000416267 400 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 RPL7P53-201ENST00000421245 739 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC011998.1-201ENST00000433403 117 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 YWHAQP9-201ENST00000445891 512 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 HMGB3P30-201ENST00000457863 606 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC010469.1-201ENST00000463864 576 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 RPL21P126-201ENST00000470049 478 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC104164.2-201ENST00000496953 495 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 PARP4P3-201ENST00000510265 317 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 RNA5SP154-201ENST00000516193 111 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC027176.2-201ENST00000559166 746 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC084783.1-201ENST00000565846 910 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC008536.1-201ENST00000602872 669 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC018618.2-201ENST00000604770 446 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 BX323046.1-201ENST00000610145 535 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 uc_338.32-201ENST00000615087 172 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 AC006065.5-201ENST00000623427 349 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS39Q96JC1 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS39Q96JC1 OR56B2P-202ENST00000641377 2453 ntBASIC4.3□□□□□ -1.72
VPS39Q96JC1 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 RAD17P1-201ENST00000418130 2042 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AL592148.3-201ENST00000608771 2646 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 NOL8P1-201ENST00000508336 3529 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 OR5P1P-201ENST00000299512 925 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC079741.1-201ENST00000321498 212 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 RNVU1-6-201ENST00000364688 164 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 MIR513A2-201ENST00000385249 127 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 MIR1303-201ENST00000408625 86 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 TMSB10P2-201ENST00000416049 131 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 XKRY2-201ENST00000442362 1093 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 136.9 ms