Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 CCT4P2-201ENST00000233836 1548 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 NMD3P1-201ENST00000439704 1488 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 ZBTB8OSP1-201ENST00000342688 498 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 RNA5SP232-201ENST00000364144 119 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 RNU6-282P-201ENST00000365357 103 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 GCNT1P4-201ENST00000404096 329 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 MIR1275-201ENST00000408770 80 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 RPL35AP31-201ENST00000418340 337 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 RPL7AP14-201ENST00000424041 802 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 MTCO3P46-201ENST00000425787 232 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 DYNLL1P7-201ENST00000429273 258 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AL031663.1-201ENST00000437445 219 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 CBWD4P-201ENST00000445695 655 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 EEF1B2P3-201ENST00000447718 678 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 GAPDHP14-201ENST00000450472 937 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 HMGB1P7-201ENST00000450921 612 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC002553.3-201ENST00000453002 341 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC104339.1-201ENST00000465478 348 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 UBA52P3-201ENST00000491303 382 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC109481.1-201ENST00000509173 282 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 RNU6-835P-201ENST00000516974 104 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AP003072.2-201ENST00000527756 676 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 NANOGNBP2-201ENST00000544753 553 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC007494.1-201ENST00000562293 760 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC122134.1-201ENST00000565664 1104 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AP001429.1-201ENST00000602568 530 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 uc_338.5-201ENST00000611839 155 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC078899.5-201ENST00000612475 178 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC096861.1-201ENST00000616652 240 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AL355974.3-201ENST00000617383 467 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC005899.7-201ENST00000618199 588 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC010928.1-201ENST00000592477 1447 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC068769.1-201ENST00000474767 2426 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC016583.1-201ENST00000624221 2431 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 LINC00622-201ENST00000562811 1570 ntBASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
UBE3DQ7Z6J8 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 RPL23AP57-201ENST00000332361 466 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 RNU6-657P-201ENST00000383904 107 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 SNORA77.2-201ENST00000408571 112 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 RN7SKP29-201ENST00000410957 272 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 ALDH7A1P4-201ENST00000412255 178 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 MTND2P23-201ENST00000422990 651 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 AC130360.1-201ENST00000425489 1117 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 AL353777.1-201ENST00000425552 326 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 AL731534.1-201ENST00000434711 269 ntBASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.78□□□□□ -1.48
UBE3DQ7Z6J8 MTND6P18-201ENST00000439477 513 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 878 ms