Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
FOXA3P55318 MIR124-3-201ENST00000384866 87 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 MIR184-201ENST00000384962 84 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 MIR92A2-201ENST00000385299 75 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 MRM2-202ENST00000407040 582 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA3P55318 RPL31P52-201ENST00000407532 367 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 HMGB1P32-201ENST00000425971 565 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 ARF4P2-201ENST00000430209 526 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 MTCO3P21-201ENST00000430791 643 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC2.91□□□□□ -1.94
FOXA3P55318 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA3P55318 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC2.91□□□□□ -1.94
FOXA3P55318 RPS29P31-201ENST00000446147 164 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC2.91□□□□□ -1.94
FOXA3P55318 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC2.91□□□□□ -1.94
FOXA3P55318 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA3P55318 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
FOXA3P55318 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC2.91□□□□□ -1.94
FOXA3P55318 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC2.91□□□□□ -1.94
FOXA3P55318 TMED11P-201ENST00000479478 690 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 AC004453.1-201ENST00000487895 408 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 TRBV12-2-201ENST00000489763 344 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 RN7SL810P-201ENST00000493031 276 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 ARL2BPP6-201ENST00000512757 439 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 AC099522.1-202ENST00000514718 367 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA3P55318 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC2.91□□□□□ -1.94
FOXA3P55318 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA3P55318 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXA3P55318 AC010680.4-201ENST00000605334 543 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC2.91□□□□□ -1.94
FOXA3P55318 RMST_8.1-201ENST00000610287 165 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 AP003497.2-201ENST00000624220 967 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 U6.98-201ENST00000637157 84 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.91□□□□□ -1.94
FOXA3P55318 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
FOXA3P55318 AC000367.1-201ENST00000452711 1766 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA3P55318 DHX40P1-201ENST00000588725 1412 ntBASIC2.91□□□□□ -1.94
FOXA3P55318 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA3P55318 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA3P55318 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXA3P55318 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
FOXA3P55318 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
FOXA3P55318 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
FOXA3P55318 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.9□□□□□ -1.94
FOXA3P55318 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC2.9□□□□□ -1.94
FOXA3P55318 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC2.9□□□□□ -1.94
FOXA3P55318 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC2.9□□□□□ -1.94
FOXA3P55318 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
FOXA3P55318 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
FOXA3P55318 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
FOXA3P55318 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA3P55318 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
FOXA3P55318 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA3P55318 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA3P55318 AC114814.2-201ENST00000419195 485 ntBASIC2.9□□□□□ -1.95
FOXA3P55318 HIGD1AP4-201ENST00000430194 280 ntBASIC2.9□□□□□ -1.95
FOXA3P55318 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA3P55318 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA3P55318 SNORD108-201ENST00000459332 71 ntBASIC2.9□□□□□ -1.95
FOXA3P55318 RN7SL330P-201ENST00000469709 307 ntBASIC2.9□□□□□ -1.95
FOXA3P55318 RN7SL629P-201ENST00000489622 285 ntBASIC2.9□□□□□ -1.95
FOXA3P55318 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA3P55318 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC2.9□□□□□ -1.95
FOXA3P55318 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA3P55318 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.9□□□□□ -1.95
FOXA3P55318 BRD9P1-201ENST00000529855 560 ntBASIC2.9□□□□□ -1.95
FOXA3P55318 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA3P55318 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA3P55318 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC2.9□□□□□ -1.95
FOXA3P55318 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA3P55318 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC2.9□□□□□ -1.95
FOXA3P55318 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA3P55318 AL365503.1-201ENST00000605247 905 ntBASIC2.9□□□□□ -1.95
FOXA3P55318 MIR7151-201ENST00000617477 60 ntBASIC2.9□□□□□ -1.95
FOXA3P55318 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA3P55318 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA3P55318 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA3P55318 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
FOXA3P55318 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA3P55318 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA3P55318 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA3P55318 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA3P55318 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA3P55318 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
FOXA3P55318 RIOK3P1-201ENST00000418778 1528 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
FOXA3P55318 AL118496.1-201ENST00000440201 1812 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA3P55318 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
FOXA3P55318 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
FOXA3P55318 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA3P55318 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
FOXA3P55318 RNA5SP167-201ENST00000365461 116 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA3P55318 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
FOXA3P55318 RNA5SP87-201ENST00000384155 118 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA3P55318 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms