Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSH6P52701 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.38□□□□□ -1.55
MSH6P52701 GNG5P1-201ENST00000255500 204 ntBASIC5.38□□□□□ -1.55
MSH6P52701 RNU1-33P-201ENST00000364249 162 ntBASIC5.38□□□□□ -1.55
MSH6P52701 U3.26-201ENST00000391236 204 ntBASIC5.38□□□□□ -1.55
MSH6P52701 HDGFP1-201ENST00000405943 252 ntBASIC5.38□□□□□ -1.55
MSH6P52701 PGBD4P8-201ENST00000412993 562 ntBASIC5.38□□□□□ -1.55
MSH6P52701 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH6P52701 CYCSP4-201ENST00000429682 331 ntBASIC5.38□□□□□ -1.55
MSH6P52701 Z74696.2-201ENST00000436514 498 ntBASIC5.38□□□□□ -1.55
MSH6P52701 AL591503.2-201ENST00000442314 1005 ntBASIC5.38□□□□□ -1.55
MSH6P52701 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
MSH6P52701 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH6P52701 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC5.38□□□□□ -1.55
MSH6P52701 MIR8057-201ENST00000620957 69 ntBASIC5.38□□□□□ -1.55
MSH6P52701 AL596275.2-204ENST00000641628 552 ntBASIC5.38□□□□□ -1.55
MSH6P52701 AL596275.2-206ENST00000641957 626 ntBASIC5.38□□□□□ -1.55
MSH6P52701 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.38□□□□□ -1.55
MSH6P52701 DDX18P4-201ENST00000511690 1966 ntBASIC5.38□□□□□ -1.55
MSH6P52701 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
MSH6P52701 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
MSH6P52701 AC058791.1-201ENST00000608412 3198 ntBASIC5.37□□□□□ -1.55
MSH6P52701 IL6STP1-201ENST00000346911 1020 ntBASIC5.37□□□□□ -1.55
MSH6P52701 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
MSH6P52701 VN1R8P-201ENST00000407739 893 ntBASIC5.37□□□□□ -1.55
MSH6P52701 RNA5SP120-201ENST00000410900 112 ntBASIC5.37□□□□□ -1.55
MSH6P52701 AC096644.3-201ENST00000416788 338 ntBASIC5.37□□□□□ -1.55
MSH6P52701 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH6P52701 AC073063.1-201ENST00000434352 607 ntBASIC5.37□□□□□ -1.55
MSH6P52701 RPL23AP89-201ENST00000439324 255 ntBASIC5.37□□□□□ -1.55
MSH6P52701 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH6P52701 DCLRE1CP1-201ENST00000454630 470 ntBASIC5.37□□□□□ -1.55
MSH6P52701 SNORD105B-201ENST00000458770 79 ntBASIC5.37□□□□□ -1.55
MSH6P52701 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH6P52701 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH6P52701 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH6P52701 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.37□□□□□ -1.55
MSH6P52701 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH6P52701 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.37□□□□□ -1.55
MSH6P52701 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.37□□□□□ -1.55
MSH6P52701 RNU1-30P-201ENST00000606575 163 ntBASIC5.37□□□□□ -1.55
MSH6P52701 AL139089.1-201ENST00000620372 975 ntBASIC5.37□□□□□ -1.55
MSH6P52701 MIR7702-201ENST00000621931 59 ntBASIC5.37□□□□□ -1.55
MSH6P52701 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH6P52701 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH6P52701 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC5.36□□□□□ -1.55
MSH6P52701 MIR1289-1-201ENST00000408836 144 ntBASIC5.36□□□□□ -1.55
MSH6P52701 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH6P52701 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.36□□□□□ -1.55
MSH6P52701 AL390879.2-203ENST00000426943 1121 ntBASIC5.36□□□□□ -1.55
MSH6P52701 AC005326.1-201ENST00000429197 123 ntBASIC5.36□□□□□ -1.55
MSH6P52701 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH6P52701 AC083863.1-201ENST00000438811 231 ntBASIC5.36□□□□□ -1.55
MSH6P52701 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH6P52701 RPS26P24-201ENST00000497656 331 ntBASIC5.36□□□□□ -1.55
MSH6P52701 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH6P52701 AC026784.1-201ENST00000507986 352 ntBASIC5.36□□□□□ -1.55
MSH6P52701 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH6P52701 RNA5SP164-201ENST00000516533 110 ntBASIC5.36□□□□□ -1.55
MSH6P52701 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH6P52701 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.36□□□□□ -1.55
MSH6P52701 AL355365.1-201ENST00000616480 294 ntBASIC5.36□□□□□ -1.55
MSH6P52701 AC119674.1-207ENST00000641355 633 ntBASIC5.36□□□□□ -1.55
MSH6P52701 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH6P52701 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH6P52701 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
MSH6P52701 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
MSH6P52701 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSH6P52701 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSH6P52701 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
MSH6P52701 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
MSH6P52701 AJ239321.1-201ENST00000424255 564 ntBASIC5.35□□□□□ -1.55
MSH6P52701 AC073335.1-201ENST00000427776 363 ntBASIC5.35□□□□□ -1.55
MSH6P52701 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.35□□□□□ -1.55
MSH6P52701 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.35□□□□□ -1.55
MSH6P52701 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSH6P52701 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.35□□□□□ -1.55
MSH6P52701 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSH6P52701 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH6P52701 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSH6P52701 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH6P52701 MIR199A2-201ENST00000385289 110 ntBASIC5.34□□□□□ -1.55
MSH6P52701 RNA5SP146-201ENST00000410743 123 ntBASIC5.34□□□□□ -1.55
MSH6P52701 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH6P52701 MTCO1P45-201ENST00000431457 267 ntBASIC5.34□□□□□ -1.55
MSH6P52701 MAPRE1P3-201ENST00000435438 796 ntBASIC5.34□□□□□ -1.55
MSH6P52701 RPL37P3-201ENST00000456825 293 ntBASIC5.34□□□□□ -1.55
MSH6P52701 AP000563.1-201ENST00000490865 758 ntBASIC5.34□□□□□ -1.55
MSH6P52701 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH6P52701 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH6P52701 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH6P52701 AC007066.2-202ENST00000566531 914 ntBASIC5.34□□□□□ -1.55
MSH6P52701 AC012493.2-201ENST00000595083 291 ntBASIC5.34□□□□□ -1.55
MSH6P52701 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH6P52701 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSH6P52701 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH6P52701 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.34□□□□□ -1.56
MSH6P52701 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
MSH6P52701 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
MSH6P52701 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 146.9 ms