Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 COX6B1P3-201ENST00000312310 260 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 RN7SKP95-201ENST00000362860 303 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 Y_RNA.212-201ENST00000364177 102 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 RNU6-450P-201ENST00000364654 107 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 RNU4-48P-201ENST00000365559 182 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 Y_RNA.464-201ENST00000384282 110 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 Y_RNA.478-201ENST00000384358 107 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AL078604.1-201ENST00000404609 466 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 MIR1302-6-201ENST00000408466 90 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC017035.1-201ENST00000411999 1115 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC5.94□□□□□ -1.46
COL8A1P27658 ATG3P1-201ENST00000419507 911 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.94□□□□□ -1.46
COL8A1P27658 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.94□□□□□ -1.46
COL8A1P27658 SNRPBP1-201ENST00000443634 282 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 HBG2-204ENST00000444587 307 ntTSL 2 BASIC5.94□□□□□ -1.46
COL8A1P27658 PFN1P11-201ENST00000445829 389 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 MORF4-201ENST00000447135 971 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 RPL23AP28-201ENST00000448062 470 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC5.94□□□□□ -1.46
COL8A1P27658 RPL39P38-201ENST00000467018 153 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 RPL12P31-201ENST00000478433 450 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC104687.1-201ENST00000485829 412 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 RN7SL629P-201ENST00000489622 285 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AL049874.2-201ENST00000492636 288 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 SSX8-201ENST00000506270 579 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 BTG4P1-201ENST00000510421 183 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 RNA5SP278-201ENST00000517055 102 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.94□□□□□ -1.46
COL8A1P27658 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.94□□□□□ -1.46
COL8A1P27658 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.94□□□□□ -1.46
COL8A1P27658 AC103843.2-201ENST00000530523 682 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.94□□□□□ -1.46
COL8A1P27658 AC140063.1-201ENST00000541343 259 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.94□□□□□ -1.46
COL8A1P27658 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.94□□□□□ -1.46
COL8A1P27658 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC5.94□□□□□ -1.46
COL8A1P27658 HNRNPA3P9-201ENST00000604913 979 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC073488.6-201ENST00000632293 754 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 TMEM209-206ENST00000473456 1961 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
COL8A1P27658 KCNK2-203ENST00000444842 3379 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.94□□□□□ -1.46
COL8A1P27658 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 AC004972.1-201ENST00000623934 2209 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC5.94□□□□□ -1.46
COL8A1P27658 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.94□□□□□ -1.46
COL8A1P27658 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 LINC01095-202ENST00000507726 1715 ntTSL 2 BASIC5.94□□□□□ -1.46
COL8A1P27658 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL8A1P27658 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 CTAGE11P-201ENST00000451540 2353 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC5.93□□□□□ -1.46
COL8A1P27658 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.93□□□□□ -1.46
COL8A1P27658 RNU6-98P-201ENST00000384173 107 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 RNU6-886P-201ENST00000384319 105 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 RNU6-244P-201ENST00000391028 104 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 RNU2-38P-201ENST00000410856 79 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.93□□□□□ -1.46
COL8A1P27658 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.93□□□□□ -1.46
COL8A1P27658 BX510359.3-201ENST00000422168 306 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC104698.1-201ENST00000435671 276 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 RPS3AP38-201ENST00000435889 763 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 TUBB4BP6-201ENST00000437576 479 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 MTND4LP30-201ENST00000454092 297 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 HLA-DPA3-207ENST00000454398 229 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC128716.1-201ENST00000475129 166 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 TRBVA-201ENST00000498804 316 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC5.93□□□□□ -1.46
COL8A1P27658 ZNF519P4-201ENST00000514008 125 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.93□□□□□ -1.46
COL8A1P27658 RNU6-475P-201ENST00000516073 104 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 MYL12AP1-201ENST00000518490 515 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms