Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC069209.1-201ENST00000619282 651 ntBASIC4.61□□□□□ -1.67
COL5A3P25940 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.61□□□□□ -1.67
COL5A3P25940 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC4.61□□□□□ -1.67
COL5A3P25940 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.61□□□□□ -1.67
COL5A3P25940 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A3P25940 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A3P25940 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A3P25940 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.61□□□□□ -1.67
COL5A3P25940 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A3P25940 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A3P25940 RN7SKP74-201ENST00000362849 309 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 HDGFP1-201ENST00000405943 252 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
COL5A3P25940 IGHV3-32-201ENST00000519182 355 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.6□□□□□ -1.67
COL5A3P25940 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.6□□□□□ -1.67
COL5A3P25940 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.6□□□□□ -1.67
COL5A3P25940 AC125494.3-201ENST00000602759 455 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL5A3P25940 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL5A3P25940 AC112198.2-201ENST00000426589 6996 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL5A3P25940 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL5A3P25940 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL5A3P25940 SNORA48.2-201ENST00000390926 124 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 RN7SKP53-201ENST00000411337 315 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 REREP1Y-201ENST00000422655 198 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 REREP2Y-201ENST00000439103 200 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 RN7SL809P-201ENST00000482040 297 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 MIR3124-201ENST00000582636 67 ntBASIC4.6□□□□□ -1.67
COL5A3P25940 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.6□□□□□ -1.67
COL5A3P25940 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.6□□□□□ -1.67
COL5A3P25940 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.6□□□□□ -1.67
COL5A3P25940 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL5A3P25940 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL5A3P25940 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.59□□□□□ -1.67
COL5A3P25940 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
COL5A3P25940 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
COL5A3P25940 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL5A3P25940 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL5A3P25940 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.59□□□□□ -1.67
COL5A3P25940 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL5A3P25940 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL5A3P25940 RNA5SP197-201ENST00000363357 119 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL5A3P25940 AC017079.2-201ENST00000416102 485 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 SDCBPP2-201ENST00000424643 885 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 OR6C71P-201ENST00000432580 913 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 AC091862.1-201ENST00000438016 1100 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 RSL24D1P3-201ENST00000449255 495 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 MTND6P6-201ENST00000478031 263 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 AGGF1P3-201ENST00000493675 1213 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 PHBP14-201ENST00000512887 367 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 MIR4433B-201ENST00000581329 102 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.59□□□□□ -1.67
COL5A3P25940 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.59□□□□□ -1.67
COL5A3P25940 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.59□□□□□ -1.67
COL5A3P25940 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.59□□□□□ -1.67
COL5A3P25940 LSM1P2-201ENST00000604911 322 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 U4.6-201ENST00000621618 127 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 IPO8P1-201ENST00000455509 3109 ntBASIC4.59□□□□□ -1.67
COL5A3P25940 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.59□□□□□ -1.67
COL5A3P25940 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
COL5A3P25940 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL5A3P25940 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL5A3P25940 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL5A3P25940 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.59□□□□□ -1.68
COL5A3P25940 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.58□□□□□ -1.68
COL5A3P25940 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.58□□□□□ -1.68
COL5A3P25940 HCFC2P1-201ENST00000392864 1592 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 RNA5SP146-201ENST00000410743 123 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 GSTM3P2-201ENST00000412746 530 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.58□□□□□ -1.68
COL5A3P25940 AC006480.1-201ENST00000449887 378 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.58□□□□□ -1.68
COL5A3P25940 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC4.58□□□□□ -1.68
COL5A3P25940 AC097462.2-201ENST00000504623 481 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.58□□□□□ -1.68
COL5A3P25940 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL5A3P25940 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.58□□□□□ -1.68
COL5A3P25940 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.58□□□□□ -1.68
COL5A3P25940 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.58□□□□□ -1.68
COL5A3P25940 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A3P25940 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A3P25940 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A3P25940 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A3P25940 AC009229.4-201ENST00000623854 1947 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.58□□□□□ -1.68
COL5A3P25940 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A3P25940 DDX18P4-201ENST00000511690 1966 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 Y_RNA.111-201ENST00000363248 100 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL5A3P25940 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.58□□□□□ -1.68
COL5A3P25940 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.58□□□□□ -1.68
COL5A3P25940 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.58□□□□□ -1.68
COL5A3P25940 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 AC069285.2-201ENST00000440210 275 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 TPTE2P3-201ENST00000441562 1189 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 AC010655.1-201ENST00000449336 292 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms