Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.01□□□□□ -1.61
BDNFP23560 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.01□□□□□ -1.61
BDNFP23560 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC5.01□□□□□ -1.61
BDNFP23560 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
BDNFP23560 AC004217.3-201ENST00000551552 878 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AC007424.1-203ENST00000554613 687 ntBASIC5.01□□□□□ -1.61
BDNFP23560 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.01□□□□□ -1.61
BDNFP23560 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.01□□□□□ -1.61
BDNFP23560 RN7SL652P-201ENST00000577769 300 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AC234771.5-201ENST00000600161 514 ntBASIC5.01□□□□□ -1.61
BDNFP23560 IGKV1OR2-9-201ENST00000603957 287 ntBASIC5.01□□□□□ -1.61
BDNFP23560 IGKV1OR2-11-201ENST00000604120 287 ntBASIC5.01□□□□□ -1.61
BDNFP23560 AC138649.5-201ENST00000637456 137 ntBASIC5.01□□□□□ -1.61
BDNFP23560 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
BDNFP23560 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BDNFP23560 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BDNFP23560 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.01□□□□□ -1.61
BDNFP23560 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BDNFP23560 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
BDNFP23560 AL672167.1-204ENST00000641875 3017 ntBASIC5.01□□□□□ -1.61
BDNFP23560 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.01□□□□□ -1.61
BDNFP23560 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
BDNFP23560 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5□□□□□ -1.61
BDNFP23560 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
BDNFP23560 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
BDNFP23560 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5□□□□□ -1.61
BDNFP23560 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
BDNFP23560 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
BDNFP23560 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
BDNFP23560 U6.112-201ENST00000384129 70 ntBASIC5□□□□□ -1.61
BDNFP23560 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC5□□□□□ -1.61
BDNFP23560 AL049697.2-201ENST00000403708 294 ntBASIC5□□□□□ -1.61
BDNFP23560 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5□□□□□ -1.61
BDNFP23560 AMMECR1LP1-201ENST00000415152 841 ntBASIC5□□□□□ -1.61
BDNFP23560 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC5□□□□□ -1.61
BDNFP23560 MTND2P11-201ENST00000423638 648 ntBASIC5□□□□□ -1.61
BDNFP23560 AC115285.1-201ENST00000424879 736 ntBASIC5□□□□□ -1.61
BDNFP23560 FAR2P4-202ENST00000425399 584 ntBASIC5□□□□□ -1.61
BDNFP23560 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC5□□□□□ -1.61
BDNFP23560 AC010881.1-201ENST00000433830 235 ntBASIC5□□□□□ -1.61
BDNFP23560 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5□□□□□ -1.61
BDNFP23560 AL050341.1-201ENST00000447743 313 ntBASIC5□□□□□ -1.61
BDNFP23560 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5□□□□□ -1.61
BDNFP23560 RPS15AP1-201ENST00000457423 391 ntBASIC5□□□□□ -1.61
BDNFP23560 RNA5SP103-201ENST00000459503 118 ntBASIC5□□□□□ -1.61
BDNFP23560 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC5□□□□□ -1.61
BDNFP23560 AC010307.1-201ENST00000467206 836 ntBASIC5□□□□□ -1.61
BDNFP23560 KRTAP5-14P-201ENST00000502328 121 ntBASIC5□□□□□ -1.61
BDNFP23560 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5□□□□□ -1.61
BDNFP23560 TMEM248P1-201ENST00000510579 951 ntBASIC5□□□□□ -1.61
BDNFP23560 AC119751.1-201ENST00000513357 765 ntBASIC5□□□□□ -1.61
BDNFP23560 TOMM20P2-201ENST00000540082 421 ntBASIC5□□□□□ -1.61
BDNFP23560 FKBP1BP1-201ENST00000553366 325 ntBASIC5□□□□□ -1.61
BDNFP23560 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC5□□□□□ -1.61
BDNFP23560 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5□□□□□ -1.61
BDNFP23560 AC087477.6-201ENST00000559595 843 ntBASIC5□□□□□ -1.61
BDNFP23560 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5□□□□□ -1.61
BDNFP23560 MIR4789-201ENST00000577469 82 ntBASIC5□□□□□ -1.61
BDNFP23560 RN7SL690P-201ENST00000582087 240 ntBASIC5□□□□□ -1.61
BDNFP23560 AC090616.5-202ENST00000582111 297 ntBASIC5□□□□□ -1.61
BDNFP23560 RN7SL622P-201ENST00000585292 275 ntBASIC5□□□□□ -1.61
BDNFP23560 AC112230.1-201ENST00000604342 547 ntBASIC5□□□□□ -1.61
BDNFP23560 AC018754.1-201ENST00000607486 925 ntBASIC5□□□□□ -1.61
BDNFP23560 AL353600.1-201ENST00000608148 251 ntBASIC5□□□□□ -1.61
BDNFP23560 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC5□□□□□ -1.61
BDNFP23560 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC5□□□□□ -1.61
BDNFP23560 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
BDNFP23560 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
BDNFP23560 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5□□□□□ -1.61
BDNFP23560 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
BDNFP23560 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5□□□□□ -1.61
BDNFP23560 AC095050.2-201ENST00000510748 1458 ntBASIC5□□□□□ -1.61
BDNFP23560 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.99□□□□□ -1.61
BDNFP23560 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
BDNFP23560 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.99□□□□□ -1.61
BDNFP23560 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BDNFP23560 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
BDNFP23560 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BDNFP23560 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BDNFP23560 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
BDNFP23560 RNA5SP443-201ENST00000363083 132 ntBASIC4.99□□□□□ -1.61
BDNFP23560 MIR16-1-201ENST00000385271 89 ntBASIC4.99□□□□□ -1.61
BDNFP23560 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
BDNFP23560 MTCO2P31-201ENST00000402702 684 ntBASIC4.99□□□□□ -1.61
BDNFP23560 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC4.99□□□□□ -1.61
BDNFP23560 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.99□□□□□ -1.61
BDNFP23560 E2F6P2-201ENST00000420708 748 ntBASIC4.99□□□□□ -1.61
BDNFP23560 AC245028.1-201ENST00000423259 256 ntBASIC4.99□□□□□ -1.61
BDNFP23560 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.99□□□□□ -1.61
BDNFP23560 GXYLT1P1-201ENST00000446657 490 ntBASIC4.99□□□□□ -1.61
BDNFP23560 AC017099.1-201ENST00000448261 1028 ntBASIC4.99□□□□□ -1.61
BDNFP23560 TVP23BP2-201ENST00000455082 615 ntBASIC4.99□□□□□ -1.61
BDNFP23560 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
BDNFP23560 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.99□□□□□ -1.61
BDNFP23560 AC006463.2-201ENST00000473326 348 ntBASIC4.99□□□□□ -1.61
BDNFP23560 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.99□□□□□ -1.61
BDNFP23560 AC078817.1-201ENST00000492623 435 ntBASIC4.99□□□□□ -1.61
BDNFP23560 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.99□□□□□ -1.61
BDNFP23560 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.99□□□□□ -1.61
BDNFP23560 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms