Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 MIR544B-201ENST00000582372 78 ntBASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 UBE2V2P2-201ENST00000587677 504 ntBASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 AC022916.3-201ENST00000592961 742 ntBASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 SUGT1P3-202ENST00000604259 383 ntBASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 AL020991.1-201ENST00000612314 373 ntBASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 AC010133.1-201ENST00000615809 842 ntBASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 MTND1P37-201ENST00000636562 264 ntBASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
PTCHD1Q96NR3 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 AC123769.1-201ENST00000530992 3192 ntBASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 AC092326.2-201ENST00000624772 1561 ntBASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
PTCHD1Q96NR3 MTCO1P7-201ENST00000419523 1542 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 SMG1P7-201ENST00000565246 2704 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 RNU6-657P-201ENST00000383904 107 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 RNU6-225P-201ENST00000384613 103 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL354890.1-201ENST00000413730 346 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 MTCO1P20-201ENST00000425366 358 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 MTCO1P27-201ENST00000448269 226 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 FABP3P2-201ENST00000453169 399 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 MTCO3P20-201ENST00000454926 688 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC012123.2-201ENST00000485809 248 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC106872.3-201ENST00000495104 446 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 RPL15P21-201ENST00000495592 567 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 KCTD9P5-201ENST00000504141 1170 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 RNA5SP271-201ENST00000516700 88 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 FAM92A1P1-201ENST00000528023 890 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 HMGB1P42-201ENST00000532126 553 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 NANOGNBP2-201ENST00000544753 553 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 CENPUP2-201ENST00000555897 1186 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL390334.1-201ENST00000556395 450 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC060780.3-201ENST00000589464 80 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC087045.1-201ENST00000605856 382 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AL359697.1-201ENST00000624879 587 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC129915.3-201ENST00000634128 948 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 MTND5P17-201ENST00000418405 1603 ntBASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms