Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC009501.3-201ENST00000605001 1352 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC008033.1-201ENST00000216407 1162 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 OR4K15-201ENST00000305051 1216 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC097374.1-203ENST00000400783 485 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 MTATP6P31-201ENST00000406985 692 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 LINC01347-201ENST00000417964 355 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AL139095.3-201ENST00000419672 1203 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC097499.1-201ENST00000444277 208 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 DHFRP3-201ENST00000455595 559 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 RPS20P21-201ENST00000466859 343 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 RPL35AP15-201ENST00000468042 339 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC108145.1-201ENST00000503770 153 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC098799.1-201ENST00000504752 800 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 SNX5P1-201ENST00000505757 1041 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC005351.1-201ENST00000511152 786 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC008562.1-201ENST00000521763 330 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 OR5BC1P-201ENST00000529327 739 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC069240.1-201ENST00000548774 375 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC008782.1-201ENST00000603386 430 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC015849.2-201ENST00000605738 409 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC007546.1-201ENST00000619452 559 ntBASIC4.33□□□□□ -1.72
VPS39Q96JC1 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS39Q96JC1 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
VPS39Q96JC1 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AL137100.1-201ENST00000556703 1620 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 Z98755.1-201ENST00000407015 1384 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 RNA5SP175-201ENST00000364275 119 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 GCNT6-201ENST00000379591 934 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AP000357.1-201ENST00000409926 1165 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AL161631.1-201ENST00000417933 486 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 BTBD7P2-201ENST00000441962 620 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC092685.1-201ENST00000447960 1243 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AL513533.1-201ENST00000453728 415 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AP000873.1-201ENST00000463987 400 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 RPL7P22-201ENST00000466005 733 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 RN7SL354P-201ENST00000469282 294 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 VN1R79P-201ENST00000593540 513 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 RNA5SP108-201ENST00000605921 117 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AL356121.2-201ENST00000624715 780 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC016717.3-201ENST00000624730 554 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 AC011266.1-201ENST00000624119 3569 ntBASIC4.32□□□□□ -1.72
VPS39Q96JC1 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
VPS39Q96JC1 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS39Q96JC1 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS39Q96JC1 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
VPS39Q96JC1 DHX40P1-201ENST00000588725 1412 ntBASIC4.31□□□□□ -1.72
VPS39Q96JC1 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms