Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MTCO1P35-201ENST00000515270 228 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 RNU6-347P-201ENST00000516658 105 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 IGKV2-38-201ENST00000517443 247 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC105233.3-201ENST00000531125 744 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 AL109741.3-201ENST00000561748 592 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 AGGF1P8-201ENST00000562979 1000 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 MIR3653-201ENST00000625572 110 ntBASIC3.12□□□□□ -1.91
HLA-DMBP28068 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HLA-DMBP28068 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HLA-DMBP28068 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HLA-DMBP28068 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.12□□□□□ -1.91
HLA-DMBP28068 AC092162.3-201ENST00000624511 1624 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC007685.1-201ENST00000329806 452 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 MIR383-201ENST00000362257 73 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 SNORA62.2-201ENST00000364672 152 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 RNA5SP366-201ENST00000365454 123 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 SNORA70C-201ENST00000384538 135 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 RPS26P8-201ENST00000393490 348 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AL034403.1-201ENST00000399414 885 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC004975.1-201ENST00000428733 208 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 MTCO3P21-201ENST00000430791 643 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 RPL23AP46-201ENST00000438548 490 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 VN1R25P-201ENST00000443385 738 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 VN1R40P-201ENST00000455196 941 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 RPS20P4-201ENST00000461659 355 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC022336.1-201ENST00000475510 337 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AP000926.1-201ENST00000479573 241 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 RPL35P6-201ENST00000490024 372 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC091167.1-201ENST00000492017 396 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 RPL31P61-201ENST00000496160 376 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC010627.1-201ENST00000503819 1294 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC008958.1-201ENST00000511047 682 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 KCTD9P2-201ENST00000512203 1013 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 MRPL49P2-201ENST00000521066 465 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 CYCSP29-201ENST00000533731 318 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC141257.3-201ENST00000572906 215 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC020910.2-201ENST00000603635 610 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AL451044.1-201ENST00000604867 238 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 AL445567.2-201ENST00000618935 498 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AC015722.2-201ENST00000622210 551 ntBASIC3.11□□□□□ -1.91
HLA-DMBP28068 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DMBP28068 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DMBP28068 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DMBP28068 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DMBP28068 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 FAM35DP-201ENST00000323387 2712 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HLA-DMBP28068 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HLA-DMBP28068 RNA5SP322-201ENST00000363617 119 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 SNORD35B-201ENST00000363660 87 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 RNU1-132P-201ENST00000364300 164 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 RNU1-89P-201ENST00000384592 164 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.1□□□□□ -1.91
HLA-DMBP28068 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HLA-DMBP28068 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HLA-DMBP28068 TPTE2P3-201ENST00000441562 1189 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 AC006011.1-201ENST00000442758 349 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 HMGB3P22-202ENST00000451823 572 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 MTCYBP14-201ENST00000457471 715 ntBASIC3.1□□□□□ -1.91
HLA-DMBP28068 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms