Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNA5SP50-201ENST00000363731 107 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 MIR128-1-201ENST00000384921 82 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 BOLA3P4-201ENST00000418151 400 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 AC127537.2-201ENST00000439258 465 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 AC093663.1-201ENST00000497190 394 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 AC108941.1-201ENST00000502853 530 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 AC021146.3-201ENST00000511911 260 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.67□□□□□ -1.66
COL5A3P25940 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.67□□□□□ -1.66
COL5A3P25940 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.67□□□□□ -1.66
COL5A3P25940 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.67□□□□□ -1.66
COL5A3P25940 AL390816.3-201ENST00000604527 1066 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 AC006077.1-201ENST00000604746 343 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.67□□□□□ -1.66
COL5A3P25940 ATE1-AS1-202ENST00000636460 506 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL5A3P25940 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
COL5A3P25940 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL5A3P25940 CDY3P-201ENST00000454543 1618 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.67□□□□□ -1.66
COL5A3P25940 AL365440.1-201ENST00000436135 2167 ntBASIC4.67□□□□□ -1.66
COL5A3P25940 AC234772.1-201ENST00000377927 937 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 RNA5SP120-201ENST00000410900 112 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AC097713.2-201ENST00000430199 356 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 HLA-N-201ENST00000437516 135 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 AL591363.1-201ENST00000450091 483 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 EIF4A1P11-201ENST00000451239 222 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AC010285.3-201ENST00000511668 676 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.66□□□□□ -1.66
COL5A3P25940 AC010342.1-201ENST00000514047 877 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 RNU1-103P-201ENST00000516502 125 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AL583832.1-201ENST00000603227 784 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.66□□□□□ -1.66
COL5A3P25940 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC4.66□□□□□ -1.66
COL5A3P25940 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
COL5A3P25940 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.66□□□□□ -1.66
COL5A3P25940 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.66□□□□□ -1.66
COL5A3P25940 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
COL5A3P25940 RNA5SP424-201ENST00000390988 115 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 OSTCP5-201ENST00000425293 453 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 RPL6P9-201ENST00000466502 859 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 RN7SL585P-201ENST00000470538 280 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.66□□□□□ -1.66
COL5A3P25940 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 HMGN2P47-201ENST00000559378 272 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 AC023389.2-201ENST00000580031 955 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.66□□□□□ -1.66
COL5A3P25940 MIR4325-201ENST00000583049 90 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 AL121890.2-201ENST00000617644 465 ntBASIC4.66□□□□□ -1.66
COL5A3P25940 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.66□□□□□ -1.66
COL5A3P25940 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL5A3P25940 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.65□□□□□ -1.66
COL5A3P25940 AC006484.1-201ENST00000435086 1884 ntBASIC4.65□□□□□ -1.66
COL5A3P25940 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL5A3P25940 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
COL5A3P25940 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL5A3P25940 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
COL5A3P25940 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.65□□□□□ -1.66
COL5A3P25940 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
COL5A3P25940 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
COL5A3P25940 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A3P25940 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.65□□□□□ -1.67
COL5A3P25940 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
COL5A3P25940 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A3P25940 BTF3P5-201ENST00000457252 467 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 AC104849.1-201ENST00000462623 405 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A3P25940 AC017015.1-201ENST00000477387 286 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 RPS29P2-201ENST00000479278 136 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.65□□□□□ -1.67
COL5A3P25940 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.65□□□□□ -1.67
COL5A3P25940 AC023161.2-201ENST00000551218 780 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.65□□□□□ -1.67
COL5A3P25940 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 AC090877.1-201ENST00000561418 344 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 MTND6P33-201ENST00000571794 183 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.65□□□□□ -1.67
COL5A3P25940 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.65□□□□□ -1.67
COL5A3P25940 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.65□□□□□ -1.67
COL5A3P25940 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.65□□□□□ -1.67
COL5A3P25940 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.65□□□□□ -1.67
COL5A3P25940 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms