Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RNA5SP308-201ENST00000362532 115 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RNA5SP333-201ENST00000363466 118 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RNA5SP334-201ENST00000364825 118 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RNU6-359P-201ENST00000365466 108 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 U3.52-201ENST00000384034 216 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 Y_RNA.529-201ENST00000384586 119 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RPL12P9-201ENST00000412942 488 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RPL35AP24-201ENST00000413846 330 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RBMY2QP-201ENST00000429799 1147 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AL450996.1-201ENST00000445574 1202 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC140076.1-201ENST00000449897 361 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 IGHV5-78-201ENST00000450948 295 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 EIF4A1P11-201ENST00000451239 222 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RPS20P24-201ENST00000457473 361 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RNU6-261P-201ENST00000459506 102 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC021660.1-201ENST00000465006 554 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AL049714.1-201ENST00000466686 347 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 UCK2-205ENST00000469256 753 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RN7SL790P-201ENST00000474043 298 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 RPL39P36-201ENST00000490784 156 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC010486.1-201ENST00000511793 424 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 Y_RNA.675-201ENST00000516389 149 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 OR5BC1P-201ENST00000529327 739 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 ARL2BPP2-201ENST00000550907 489 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 OR4T1P-201ENST00000554933 911 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC005261.5-201ENST00000596280 355 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 CYCSP1-201ENST00000604815 315 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC097467.4-201ENST00000605504 141 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AL513218.1-201ENST00000606527 391 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC010133.1-201ENST00000615809 842 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 MIR7854-201ENST00000620068 65 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AL121936.2-201ENST00000641935 662 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC140Q96MF4 MAPK10-261ENST00000641050 3109 ntBASIC5.08□□□□□ -1.6
CCDC140Q96MF4 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 FANCD2P2-201ENST00000437591 1400 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 LRRC37A12P-201ENST00000454917 1801 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC007406.5-201ENST00000570140 3170 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RNU4-73P-201ENST00000363164 141 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RNU6-767P-201ENST00000384132 107 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 PSMA6P1-201ENST00000400275 741 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 HMGN1P24-201ENST00000412282 298 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RANP6-201ENST00000413691 644 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms