Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC025574.1-201ENST00000554784 1653 ntBASIC5.07□□□□□ -1.6
BDNFP23560 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.07□□□□□ -1.6
BDNFP23560 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.07□□□□□ -1.6
BDNFP23560 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
BDNFP23560 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.06□□□□□ -1.6
BDNFP23560 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.06□□□□□ -1.6
BDNFP23560 SEPT7P7-201ENST00000420492 1301 ntBASIC5.06□□□□□ -1.6
BDNFP23560 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.06□□□□□ -1.6
BDNFP23560 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.06□□□□□ -1.6
BDNFP23560 RNU6-1243P-201ENST00000364028 107 ntBASIC5.06□□□□□ -1.6
BDNFP23560 SNORA56-201ENST00000383966 129 ntBASIC5.06□□□□□ -1.6
BDNFP23560 RNU1-82P-201ENST00000390851 165 ntBASIC5.06□□□□□ -1.6
BDNFP23560 MIR298-201ENST00000401212 88 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AL355379.1-201ENST00000405542 640 ntBASIC5.06□□□□□ -1.6
BDNFP23560 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.06□□□□□ -1.6
BDNFP23560 AC007738.1-201ENST00000413892 348 ntBASIC5.06□□□□□ -1.6
BDNFP23560 UBE2V1P9-201ENST00000414760 368 ntBASIC5.06□□□□□ -1.6
BDNFP23560 FABP7P1-201ENST00000424004 391 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AL732292.1-201ENST00000426692 226 ntBASIC5.06□□□□□ -1.6
BDNFP23560 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.06□□□□□ -1.6
BDNFP23560 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.06□□□□□ -1.6
BDNFP23560 AL451139.1-201ENST00000434718 346 ntBASIC5.06□□□□□ -1.6
BDNFP23560 USP9YP7-201ENST00000436723 430 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AL158053.1-201ENST00000441503 453 ntBASIC5.06□□□□□ -1.6
BDNFP23560 CEACAMP9-201ENST00000442990 513 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AL592437.1-201ENST00000443781 492 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.06□□□□□ -1.6
BDNFP23560 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC5.06□□□□□ -1.6
BDNFP23560 AL590399.6-201ENST00000446396 307 ntBASIC5.06□□□□□ -1.6
BDNFP23560 USP9YP32-201ENST00000452432 430 ntBASIC5.06□□□□□ -1.6
BDNFP23560 RPS27P23-201ENST00000487608 251 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.06□□□□□ -1.6
BDNFP23560 KRT19P6-201ENST00000510983 209 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC5.06□□□□□ -1.6
BDNFP23560 IGKV1-32-201ENST00000519290 311 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.06□□□□□ -1.6
BDNFP23560 AP006289.1-201ENST00000538089 277 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.06□□□□□ -1.6
BDNFP23560 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
BDNFP23560 MIR4330-201ENST00000579077 105 ntBASIC5.06□□□□□ -1.6
BDNFP23560 RN7SL52P-201ENST00000584271 284 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.06□□□□□ -1.6
BDNFP23560 AC120053.1-201ENST00000607706 736 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AP005229.2-201ENST00000609980 697 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.06□□□□□ -1.6
BDNFP23560 MIR6780A-201ENST00000615089 68 ntBASIC5.06□□□□□ -1.6
BDNFP23560 RN7SL722P-201ENST00000617780 284 ntBASIC5.06□□□□□ -1.6
BDNFP23560 RN7SL565P-201ENST00000618246 284 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AC095038.2-201ENST00000621464 1070 ntBASIC5.06□□□□□ -1.6
BDNFP23560 NEAT1-202ENST00000501122 22743 ntBASIC5.06□□□□□ -1.6
BDNFP23560 AL442639.1-201ENST00000625030 1899 ntBASIC5.06□□□□□ -1.6
BDNFP23560 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.06□□□□□ -1.6
BDNFP23560 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
BDNFP23560 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
BDNFP23560 AC100778.3-201ENST00000580060 1750 ntBASIC5.06□□□□□ -1.6
BDNFP23560 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.06□□□□□ -1.6
BDNFP23560 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
BDNFP23560 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
BDNFP23560 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 RNA5SP502-201ENST00000362694 119 ntBASIC5.05□□□□□ -1.6
BDNFP23560 RNA5SP505-201ENST00000364748 108 ntBASIC5.05□□□□□ -1.6
BDNFP23560 RNU6-398P-201ENST00000384143 109 ntBASIC5.05□□□□□ -1.6
BDNFP23560 MIR192-201ENST00000384915 110 ntBASIC5.05□□□□□ -1.6
BDNFP23560 SNORD65C-201ENST00000390962 71 ntBASIC5.05□□□□□ -1.6
BDNFP23560 RNU6-932P-201ENST00000391108 106 ntBASIC5.05□□□□□ -1.6
BDNFP23560 RPS16P5-201ENST00000406501 404 ntBASIC5.05□□□□□ -1.6
BDNFP23560 RN7SKP216-201ENST00000411050 312 ntBASIC5.05□□□□□ -1.6
BDNFP23560 CTSL3P-202ENST00000412179 788 ntBASIC5.05□□□□□ -1.6
BDNFP23560 TRIM60P5Y-201ENST00000413946 574 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AC246680.2-201ENST00000422106 389 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AC104333.2-201ENST00000422630 192 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AL009174.1-201ENST00000426577 416 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AL512637.2-201ENST00000431287 1256 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.05□□□□□ -1.6
BDNFP23560 AC006994.1-201ENST00000438212 839 ntBASIC5.05□□□□□ -1.6
BDNFP23560 AC005002.1-201ENST00000447458 540 ntBASIC5.05□□□□□ -1.6
BDNFP23560 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.05□□□□□ -1.6
BDNFP23560 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 CYCSP53-201ENST00000455540 265 ntBASIC5.05□□□□□ -1.6
BDNFP23560 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.05□□□□□ -1.6
BDNFP23560 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.05□□□□□ -1.6
BDNFP23560 RN7SL354P-201ENST00000469282 294 ntBASIC5.05□□□□□ -1.6
BDNFP23560 RN7SL738P-201ENST00000470264 297 ntBASIC5.05□□□□□ -1.6
BDNFP23560 RPL12P20-201ENST00000475538 479 ntBASIC5.05□□□□□ -1.6
BDNFP23560 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.05□□□□□ -1.6
BDNFP23560 GAPDHP36-201ENST00000480688 918 ntBASIC5.05□□□□□ -1.6
BDNFP23560 RPL23AP72-201ENST00000492447 435 ntBASIC5.05□□□□□ -1.6
BDNFP23560 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.05□□□□□ -1.6
BDNFP23560 AC098799.1-201ENST00000504752 800 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms