Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC39Q9UFE4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC083899.1-201ENST00000454465 3819 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC005539.1-201ENST00000443768 1479 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 OR9G4-201ENST00000302957 984 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 RNA5SP477-201ENST00000362639 119 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 Y_RNA.295-201ENST00000364918 102 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 Y_RNA.356-201ENST00000365475 113 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 Y_RNA.460-201ENST00000384255 102 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 METTL5-204ENST00000409340 472 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 MRPL53P1-201ENST00000414323 319 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AL354751.2-201ENST00000415471 210 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 RPL21P111-201ENST00000418453 477 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 PRUNEP1-201ENST00000425846 705 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC110602.1-201ENST00000437414 318 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 RPL22P17-201ENST00000438729 315 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 YWHAZP2-201ENST00000440317 728 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 RPL7P36-201ENST00000444633 681 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 ACA64.1-201ENST00000459171 127 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AP002884.1-201ENST00000479691 655 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 VPS26AP1-201ENST00000483197 979 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC008837.2-201ENST00000513076 418 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 RNU6-327P-201ENST00000516270 127 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 Y_RNA.675-201ENST00000516389 149 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 RNA5SP473-201ENST00000516402 125 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 HMGN2P36-201ENST00000529541 409 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC024405.1-201ENST00000532521 1042 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC008127.2-201ENST00000549925 1075 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC006960.3-201ENST00000561845 705 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AL360085.1-201ENST00000604713 532 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AL139124.1-201ENST00000609123 421 ntBASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
CCDC39Q9UFE4 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 Z99496.1-201ENST00000469424 1477 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC245100.2-201ENST00000454544 1679 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 RNA5SP433-201ENST00000364491 114 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 SNORD65C-201ENST00000390962 71 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 RNU6-332P-201ENST00000391193 108 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 SDCBPP3-201ENST00000419629 891 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC005189.1-201ENST00000431286 310 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC104850.1-201ENST00000435940 476 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 RPL23AP76-201ENST00000441860 458 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AL050341.1-201ENST00000447743 313 ntBASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.47□□□□□ -1.37
CCDC39Q9UFE4 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms