Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC024341.1-201ENST00000526444 1552 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 RNU1-15P-201ENST00000353977 144 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 RNU4-44P-201ENST00000363050 141 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 HDGFP1-201ENST00000405943 252 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 XKRYP4-201ENST00000414395 483 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AL161631.1-201ENST00000417933 486 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 MTCO3P4-201ENST00000419236 787 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 RPL23AP38-201ENST00000423801 469 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 COX6B1P7-201ENST00000430845 235 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 PRELID3BP10-201ENST00000431957 584 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC091390.1-201ENST00000433904 331 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 MTCYBP21-201ENST00000443300 1113 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 PTMAP3-201ENST00000447474 330 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 XKRYP5-201ENST00000449659 483 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 EIF4A1P11-201ENST00000451239 222 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 PPIAP21-201ENST00000464473 501 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 CCDC75P1-201ENST00000469247 791 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 RPS29P19-201ENST00000479709 171 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 RNA5SP360-201ENST00000516555 118 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 SNORA31.13-201ENST00000516624 135 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC105233.3-201ENST00000531125 744 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC025884.1-201ENST00000556034 378 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC136624.4-201ENST00000573044 370 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AL671309.1-201ENST00000603750 544 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 MIR8059-201ENST00000620427 81 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AC015726.3-201ENST00000624501 418 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.28□□□□□ -1.72
LHX3Q9UBR4 GTF2H2B-203ENST00000508065 1432 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 AL451142.2-201ENST00000429076 2090 ntBASIC4.28□□□□□ -1.72
LHX3Q9UBR4 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 SCN1A-220ENST00000641603 12506 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 IL6STP1-201ENST00000346911 1020 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 BMS1P3-201ENST00000372011 932 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 RNU6-317P-201ENST00000384031 107 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 MIR142-201ENST00000384835 87 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 HMGB1P13-201ENST00000406019 642 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 RN7SKP182-201ENST00000410772 298 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 MTATP6P19-201ENST00000413797 659 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 TATDN1P1-201ENST00000414123 891 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 RBMY1KP-201ENST00000423480 476 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 RPS24P8-201ENST00000431490 402 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 CBX1P4-201ENST00000439415 457 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 RPL7L1P1-201ENST00000448259 785 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 NPM1P17-201ENST00000479221 602 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AF213884.1-201ENST00000488102 463 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 RPS27AP13-201ENST00000498403 237 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 BNIP3P41-201ENST00000503774 571 ntBASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.27□□□□□ -1.73
LHX3Q9UBR4 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms