Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS35Q96QK1 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS35Q96QK1 AL133412.1-201ENST00000380194 2992 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 IQCB2P-201ENST00000401788 1633 ntBASIC4.32□□□□□ -1.72
VPS35Q96QK1 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS35Q96QK1 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 PNPT1P2-201ENST00000456768 2050 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS35Q96QK1 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS35Q96QK1 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC097374.1-203ENST00000400783 485 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 RNU4-25P-201ENST00000410569 230 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 RNA5SP104-201ENST00000410989 118 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 Y_RNA.625-201ENST00000411256 107 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC016397.1-201ENST00000412463 242 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 EIF1P3-201ENST00000423841 334 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 RPEP2-201ENST00000432149 701 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 MTND5P8-201ENST00000449817 1083 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 RN7SL303P-201ENST00000469773 251 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 CEACAMP10-202ENST00000495431 496 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC010374.1-201ENST00000503762 1237 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC025459.1-201ENST00000504072 156 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC018797.3-201ENST00000513388 1241 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 RNA5SP154-201ENST00000516193 111 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AL352979.3-201ENST00000553515 247 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC027176.2-201ENST00000559166 746 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS35Q96QK1 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC110743.1-201ENST00000584870 478 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC005034.4-201ENST00000603612 899 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC110792.4-201ENST00000609843 298 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS35Q96QK1 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AL118508.4-201ENST00000624142 1176 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AC114546.3-201ENST00000623582 1734 ntBASIC4.31□□□□□ -1.72
VPS35Q96QK1 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS35Q96QK1 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS35Q96QK1 CYP1D1P-201ENST00000416662 1433 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 RNA5SP52-201ENST00000362448 134 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 RNA5SP175-201ENST00000364275 119 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 SNORA62.2-201ENST00000364672 152 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 RNU4-31P-201ENST00000384211 141 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 MIR141-201ENST00000384975 95 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 MIR93-201ENST00000385024 80 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AL603766.1-201ENST00000407763 664 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC016712.1-201ENST00000431088 378 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 RPL23AP52-201ENST00000439311 478 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 ACTR3P2-201ENST00000439585 1257 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AL512326.1-201ENST00000443050 721 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC009220.1-201ENST00000451614 275 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 RPS20P4-201ENST00000461659 355 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 RPL35AP15-201ENST00000468042 339 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC146944.2-203ENST00000502493 354 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC139495.1-202ENST00000513164 354 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 HAUS1P3-201ENST00000523909 662 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 TRAV8-5-201ENST00000537369 341 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC068446.3-201ENST00000555285 382 ntBASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.3□□□□□ -1.72
VPS35Q96QK1 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms