Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC226101.1-201ENST00000401483 387 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 LINC02470-201ENST00000412084 979 ntTSL 2 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC007899.1-201ENST00000412776 775 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 IPPKP1-201ENST00000422501 768 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC073464.3-201ENST00000422564 712 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC002504.1-201ENST00000438281 691 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 OR52U1P-201ENST00000439752 923 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 SERPINA7P1-201ENST00000443077 631 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 RPL21P11-201ENST00000461458 483 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC063943.1-201ENST00000465434 453 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 RPL21P18-201ENST00000469899 480 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC037198.2-201ENST00000478845 733 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC021205.2-201ENST00000480069 347 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC078817.1-201ENST00000492623 435 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 RN7SKP282-201ENST00000516824 299 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AP003041.2-201ENST00000525666 1180 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 RGS5-219ENST00000528019 512 ntTSL 4 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AP001804.2-201ENST00000533932 910 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 ASB8-204ENST00000536071 568 ntTSL 4 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC068305.2-201ENST00000550567 1205 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC055876.1-202ENST00000567053 138 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AP001180.3-201ENST00000582221 145 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 MIR4266-201ENST00000583300 55 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC090774.2-201ENST00000584708 322 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 MIR3138-201ENST00000585238 82 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC006116.7-201ENST00000590141 756 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AL133338.2-201ENST00000604292 736 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AL137849.1-201ENST00000604767 169 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC104695.2-201ENST00000605056 775 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 U91328.4-201ENST00000608919 517 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC109309.2-201ENST00000612597 332 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC211486.4-201ENST00000621495 113 ntBASIC2.34□□□□□ -2.03
LINC00643Q86TS7 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 ASB8-218ENST00000629941 278 ntTSL 5 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.34□□□□□ -2.03
LINC00643Q86TS7 CIR1P2-201ENST00000514821 1342 ntBASIC2.34□□□□□ -2.04
LINC00643Q86TS7 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
LINC00643Q86TS7 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.04
LINC00643Q86TS7 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC2.34□□□□□ -2.04
LINC00643Q86TS7 MTND5P19-201ENST00000424872 1794 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 SNURFL-201ENST00000309296 343 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 XKRYP4-201ENST00000414395 483 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 MRPS18BP2-201ENST00000434310 759 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 ISCA1P2-201ENST00000438679 421 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 RPS7P5-201ENST00000441482 581 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC239367.2-201ENST00000447309 705 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 XKRYP5-201ENST00000449659 483 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC093392.2-201ENST00000450682 337 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 RN7SL798P-201ENST00000468562 301 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC093278.1-201ENST00000494700 600 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 RN7SL649P-201ENST00000496974 275 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 IGLVVI-25-1-201ENST00000521893 249 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AP000926.4-201ENST00000527351 454 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AL163153.1-201ENST00000554223 283 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.33□□□□□ -2.04
LINC00643Q86TS7 MIR4502-201ENST00000580432 81 ntBASIC2.33□□□□□ -2.04
LINC00643Q86TS7 MIR4505-201ENST00000582238 73 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms