Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.48□□□□□ -1.53
USP39Q53GS9 NPM1P47-201ENST00000560843 856 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.48□□□□□ -1.53
USP39Q53GS9 AC011840.5-201ENST00000582125 771 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 AC025449.1-201ENST00000603896 529 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 NDUFA8P1-201ENST00000605525 367 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AP003117.2-201ENST00000606010 545 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AL391497.1-201ENST00000608671 547 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AC138932.5-201ENST00000617759 563 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AC072046.2-201ENST00000618366 268 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
USP39Q53GS9 AL353662.3-201ENST00000625131 237 ntBASIC5.48□□□□□ -1.53
USP39Q53GS9 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.48□□□□□ -1.53
USP39Q53GS9 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.48□□□□□ -1.53
USP39Q53GS9 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USP39Q53GS9 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
USP39Q53GS9 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.47□□□□□ -1.53
USP39Q53GS9 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.47□□□□□ -1.53
USP39Q53GS9 AL355852.1-201ENST00000454081 1771 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
USP39Q53GS9 AP000776.1-201ENST00000530032 1663 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.47□□□□□ -1.53
USP39Q53GS9 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.47□□□□□ -1.53
USP39Q53GS9 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
USP39Q53GS9 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP39Q53GS9 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.47□□□□□ -1.53
USP39Q53GS9 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
USP39Q53GS9 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP39Q53GS9 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP39Q53GS9 OR4G2P-201ENST00000328113 903 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
USP39Q53GS9 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.47□□□□□ -1.53
USP39Q53GS9 SNORA17.1-201ENST00000362945 126 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
USP39Q53GS9 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
USP39Q53GS9 HMGB3P7-201ENST00000400214 611 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 GSTA12P-201ENST00000402398 508 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AL512430.2-201ENST00000406786 339 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC211486.3-201ENST00000412694 621 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.47□□□□□ -1.53
USP39Q53GS9 FNDC3CP-201ENST00000420795 1155 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP39Q53GS9 TMEM183AP1-205ENST00000432739 290 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 PA2G4P6-201ENST00000438325 1197 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.47□□□□□ -1.53
USP39Q53GS9 MTND3P1-201ENST00000441336 220 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 COX6CP2-201ENST00000444980 225 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AL596266.1-201ENST00000448132 400 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC5.47□□□□□ -1.53
USP39Q53GS9 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 SNORD125-201ENST00000459538 96 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC011979.1-201ENST00000472300 483 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.47□□□□□ -1.53
USP39Q53GS9 AC084024.2-201ENST00000503480 791 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 KRT19P6-201ENST00000510983 209 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC5.47□□□□□ -1.53
USP39Q53GS9 AC106038.2-201ENST00000520706 568 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 MED28P5-201ENST00000528254 438 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP39Q53GS9 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC5.47□□□□□ -1.53
USP39Q53GS9 AC092490.3-201ENST00000545370 572 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC018552.1-201ENST00000562099 811 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP39Q53GS9 RPL10P14-201ENST00000565265 298 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC5.47□□□□□ -1.53
USP39Q53GS9 MIR4480-201ENST00000582492 71 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.47□□□□□ -1.53
USP39Q53GS9 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.47□□□□□ -1.53
USP39Q53GS9 RNU4-89P-201ENST00000607443 133 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.47□□□□□ -1.53
USP39Q53GS9 AC008443.7-201ENST00000622195 246 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC010435.1-201ENST00000623353 1177 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC5.47□□□□□ -1.53
USP39Q53GS9 OR5AK4P-201ENST00000635912 903 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 CYP4F35P-202ENST00000636121 390 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC099654.12-201ENST00000639868 649 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC092447.7-201ENST00000422212 1621 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC079298.1-201ENST00000625026 1619 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.47□□□□□ -1.53
USP39Q53GS9 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.47□□□□□ -1.53
USP39Q53GS9 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
USP39Q53GS9 AC006206.1-201ENST00000544842 3387 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 AC003985.2-201ENST00000562268 1669 ntBASIC5.47□□□□□ -1.53
USP39Q53GS9 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
USP39Q53GS9 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP39Q53GS9 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
USP39Q53GS9 AC083899.1-201ENST00000454465 3819 ntBASIC5.46□□□□□ -1.53
USP39Q53GS9 AC017007.4-201ENST00000503353 1352 ntBASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms