Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC114947.2-201ENST00000565748 2125 ntBASIC5.26□□□□□ -1.57
MSX2P35548 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.25□□□□□ -1.57
MSX2P35548 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.25□□□□□ -1.57
MSX2P35548 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.25□□□□□ -1.57
MSX2P35548 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 RNU1-65P-201ENST00000363919 148 ntBASIC5.25□□□□□ -1.57
MSX2P35548 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 MTCO1P17-201ENST00000411522 491 ntBASIC5.25□□□□□ -1.57
MSX2P35548 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC5.25□□□□□ -1.57
MSX2P35548 AC002524.1-201ENST00000411687 547 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AC211486.3-201ENST00000412694 621 ntBASIC5.25□□□□□ -1.57
MSX2P35548 RPL12P9-201ENST00000412942 488 ntBASIC5.25□□□□□ -1.57
MSX2P35548 USP9YP6-201ENST00000413550 854 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AL109913.1-201ENST00000421173 514 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 AC009480.2-201ENST00000422916 432 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AL139158.1-201ENST00000424719 340 ntBASIC5.25□□□□□ -1.57
MSX2P35548 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.25□□□□□ -1.57
MSX2P35548 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 AC090804.1-201ENST00000448870 490 ntBASIC5.25□□□□□ -1.57
MSX2P35548 PAXBP1P1-201ENST00000449315 447 ntBASIC5.25□□□□□ -1.57
MSX2P35548 RPL23AP35-201ENST00000451906 501 ntBASIC5.25□□□□□ -1.57
MSX2P35548 USP9YP34-201ENST00000453983 808 ntBASIC5.25□□□□□ -1.57
MSX2P35548 RPL30P9-201ENST00000465586 330 ntBASIC5.25□□□□□ -1.57
MSX2P35548 RN7SL57P-201ENST00000493687 290 ntBASIC5.25□□□□□ -1.57
MSX2P35548 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.25□□□□□ -1.57
MSX2P35548 AC122718.2-201ENST00000505325 591 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 AC074255.1-201ENST00000511259 501 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC5.25□□□□□ -1.57
MSX2P35548 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 RN7SKP298-201ENST00000515950 94 ntBASIC5.25□□□□□ -1.57
MSX2P35548 RNA5SP441-201ENST00000516809 88 ntBASIC5.25□□□□□ -1.57
MSX2P35548 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 AP001646.1-201ENST00000527936 915 ntBASIC5.25□□□□□ -1.57
MSX2P35548 DEFB108A-201ENST00000530110 222 ntBASIC5.25□□□□□ -1.57
MSX2P35548 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 CR383656.6-201ENST00000550518 394 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 MIR4776-2-201ENST00000580204 80 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC5.25□□□□□ -1.57
MSX2P35548 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX2P35548 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 AL022154.1-201ENST00000604698 785 ntBASIC5.25□□□□□ -1.57
MSX2P35548 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 AC126175.1-201ENST00000617041 758 ntBASIC5.25□□□□□ -1.57
MSX2P35548 AC073348.1-201ENST00000623002 331 ntBASIC5.25□□□□□ -1.57
MSX2P35548 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 AL683826.1-201ENST00000624104 627 ntBASIC5.25□□□□□ -1.57
MSX2P35548 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
MSX2P35548 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX2P35548 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
MSX2P35548 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.25□□□□□ -1.57
MSX2P35548 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX2P35548 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 CCT8P1-201ENST00000413611 1657 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 GTF2H2B-203ENST00000508065 1432 ntBASIC5.24□□□□□ -1.57
MSX2P35548 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.24□□□□□ -1.57
MSX2P35548 CR383658.2-201ENST00000547576 1525 ntBASIC5.24□□□□□ -1.57
MSX2P35548 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
MSX2P35548 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.24□□□□□ -1.57
MSX2P35548 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
MSX2P35548 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
MSX2P35548 RN7SKP226-201ENST00000364912 300 ntBASIC5.24□□□□□ -1.57
MSX2P35548 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX2P35548 RNU6-185P-201ENST00000384421 107 ntBASIC5.24□□□□□ -1.57
MSX2P35548 SNORD56.6-201ENST00000384569 71 ntBASIC5.24□□□□□ -1.57
MSX2P35548 MIR130B-202ENST00000385018 82 ntBASIC5.24□□□□□ -1.57
MSX2P35548 Y_RNA.582-201ENST00000391023 95 ntBASIC5.24□□□□□ -1.57
MSX2P35548 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.24□□□□□ -1.57
MSX2P35548 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.24□□□□□ -1.57
MSX2P35548 RPL7AP49-201ENST00000429522 581 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AC000111.3-201ENST00000433478 193 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AL591438.1-201ENST00000433508 581 ntBASIC5.24□□□□□ -1.57
MSX2P35548 RPL19P16-201ENST00000433839 588 ntBASIC5.24□□□□□ -1.57
MSX2P35548 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX2P35548 AC005077.1-201ENST00000449226 375 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms