Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC007738.1-201ENST00000413892 348 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC6.09□□□□□ -1.43
HMGB1P09429 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC6.09□□□□□ -1.43
HMGB1P09429 AL449283.1-202ENST00000418249 604 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 KRR1P1-201ENST00000419430 803 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC244098.2-201ENST00000422068 99 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC6.09□□□□□ -1.43
HMGB1P09429 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC6.09□□□□□ -1.43
HMGB1P09429 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC6.09□□□□□ -1.43
HMGB1P09429 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.09□□□□□ -1.43
HMGB1P09429 RPL31P54-201ENST00000429803 370 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 SEPT7P5-201ENST00000434048 306 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC6.09□□□□□ -1.43
HMGB1P09429 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC6.09□□□□□ -1.43
HMGB1P09429 AC093155.1-201ENST00000440164 826 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC6.09□□□□□ -1.43
HMGB1P09429 AC004980.3-201ENST00000447046 365 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC016724.1-201ENST00000453215 421 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 FCF1P6-201ENST00000456841 595 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 SYPL1P1-201ENST00000473622 768 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 VPS26AP1-201ENST00000483197 979 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC005412.2-201ENST00000492004 341 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 RN7SL441P-201ENST00000492388 296 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.09□□□□□ -1.43
HMGB1P09429 RNU2-58P-201ENST00000516403 183 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.09□□□□□ -1.43
HMGB1P09429 CD69-203ENST00000536709 1020 ntTSL 2 BASIC6.09□□□□□ -1.43
HMGB1P09429 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.09□□□□□ -1.43
HMGB1P09429 AL049634.3-201ENST00000604968 457 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AL512329.2-201ENST00000607350 548 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC6.09□□□□□ -1.43
HMGB1P09429 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.09□□□□□ -1.43
HMGB1P09429 AC084824.4-201ENST00000620106 731 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.09□□□□□ -1.43
HMGB1P09429 MFSD8-245ENST00000641743 948 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AC112198.2-201ENST00000426589 6996 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC6.09□□□□□ -1.43
HMGB1P09429 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.44
HMGB1P09429 DHX40P1-201ENST00000588725 1412 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 PHACTR2P1-201ENST00000605639 1414 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 AC130650.2-201ENST00000618736 2403 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC6.08□□□□□ -1.44
HMGB1P09429 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
HMGB1P09429 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 MTCO1P56-201ENST00000401674 224 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 RBMY2KP-201ENST00000418221 992 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AC092634.6-201ENST00000418558 192 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 RPL7P53-201ENST00000421245 739 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AL354692.1-201ENST00000423044 315 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AL513174.1-201ENST00000423182 629 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC6.08□□□□□ -1.44
HMGB1P09429 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC6.08□□□□□ -1.44
HMGB1P09429 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
HMGB1P09429 OR52B5P-201ENST00000435337 951 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC6.08□□□□□ -1.44
HMGB1P09429 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 AC069528.1-202ENST00000482888 637 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 NIFKP7-201ENST00000503365 834 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 BOLA3P3-201ENST00000505182 232 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC6.08□□□□□ -1.44
HMGB1P09429 AC008694.2-201ENST00000517591 306 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 MTCYBP27-201ENST00000555160 670 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC6.08□□□□□ -1.44
HMGB1P09429 OR1AB1P-201ENST00000585564 761 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AP005432.2-201ENST00000608162 586 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC6.08□□□□□ -1.44
HMGB1P09429 AP000894.4-201ENST00000610185 483 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 RPSAP73-201ENST00000614820 330 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AC008115.4-201ENST00000619780 775 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC6.08□□□□□ -1.44
HMGB1P09429 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC6.08□□□□□ -1.44
HMGB1P09429 AL157770.1-201ENST00000623049 439 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 AP000648.2-201ENST00000624182 404 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
HMGB1P09429 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
HMGB1P09429 MAPK10-328ENST00000641553 4009 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 TLK1P1-201ENST00000456760 2440 ntBASIC6.08□□□□□ -1.44
HMGB1P09429 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HMGB1P09429 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
HMGB1P09429 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms