Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC011998.1-201ENST00000433403 117 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 RPL23AP93-201ENST00000440847 484 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL353093.1-201ENST00000441292 436 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 CASP3P1-201ENST00000446037 609 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL031584.1-201ENST00000447169 754 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC104651.2-201ENST00000447549 528 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC243772.1-201ENST00000451620 410 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 CYCSP34-201ENST00000458172 304 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC010476.1-201ENST00000519111 851 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC091979.2-201ENST00000607514 214 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC097504.2-201ENST00000608088 454 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC090772.4-201ENST00000623599 362 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL445437.1-201ENST00000623157 3087 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 MAPK10-303ENST00000641324 3959 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AL731532.2-201ENST00000623542 1953 ntBASIC4.44□□□□□ -1.7
CCDC3Q9BQI4 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC107027.3-201ENST00000565095 3473 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 Y_RNA.126-201ENST00000363382 111 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 MIR620-201ENST00000385232 95 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 RPL22P22-201ENST00000395439 379 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 RPL21P108-201ENST00000413857 481 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 RPS12P10-201ENST00000427031 377 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 FTH1P16-201ENST00000435241 552 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 HMGN1P5-201ENST00000448591 263 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 RPS6P2-201ENST00000454208 705 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 FCF1P6-201ENST00000456841 595 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 RNU7-27P-201ENST00000459281 62 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 ATP5G1P3-201ENST00000463301 410 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 RN7SL303P-201ENST00000469773 251 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 RN7SKP46-201ENST00000515942 234 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 MIR548Y-201ENST00000582739 110 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 MIR3138-201ENST00000585238 82 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 BNIP3P39-201ENST00000601077 554 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC068620.3-201ENST00000602749 560 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC133552.5-201ENST00000604266 540 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 ARF4P1-201ENST00000605447 541 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AF129408.1-201ENST00000608767 431 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AL391834.2-201ENST00000609982 546 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 MIR7973-1-201ENST00000614683 76 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC114781.5-201ENST00000615297 108 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 RMST_10.1-201ENST00000616309 154 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC078880.5-201ENST00000617845 421 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 FRG1HP-204ENST00000617940 757 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AP003476.1-201ENST00000623984 516 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AP002967.1-201ENST00000624203 539 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 MTCO1P18-201ENST00000455518 1419 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 GTF2H2B-203ENST00000508065 1432 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AC125257.1-201ENST00000560400 2930 ntBASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC3Q9BQI4 AL031119.1-201ENST00000404707 1879 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms