Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU6-108P-201ENST00000365558 107 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC092634.1-201ENST00000366505 199 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 RNU6-1011P-201ENST00000384668 107 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 RPL5P20-201ENST00000403848 896 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AL359092.1-201ENST00000417156 265 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC007529.1-201ENST00000418574 2178 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC069213.2-201ENST00000420238 366 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC006509.1-201ENST00000420788 634 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 EIF1P3-201ENST00000423841 334 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 RPL12P34-201ENST00000424532 479 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC137499.1-201ENST00000427602 88 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AL136231.1-201ENST00000429407 730 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 TIMM9P1-201ENST00000436122 256 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC062022.1-201ENST00000451026 1684 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 TFP1-201ENST00000460564 572 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 MTCO2P29-201ENST00000465212 189 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC006512.1-201ENST00000468816 291 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC068522.1-201ENST00000482895 345 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 RPL32P9-201ENST00000487963 407 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC009567.2-201ENST00000502989 349 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 MRPL57P6-201ENST00000506570 309 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC005798.1-201ENST00000513715 387 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 SCARNA5-201ENST00000516201 276 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 RN7SKP277-201ENST00000516895 283 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC073581.1-201ENST00000519036 575 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 PHBP17-201ENST00000528576 541 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC002519.2-203ENST00000567043 837 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC027796.1-201ENST00000575593 512 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ARGFXP2-201ENST00000579304 949 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 RPL29P33-201ENST00000587474 316 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC010680.3-201ENST00000604215 520 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC087045.1-201ENST00000605856 382 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC009902.3-201ENST00000606235 2172 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AL445222.1-201ENST00000607259 628 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AL136984.1-201ENST00000607611 1893 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AL121757.2-201ENST00000611223 313 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC027088.4-201ENST00000611559 1947 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 MIR6849-201ENST00000618543 69 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC022106.2-201ENST00000620114 757 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC006504.8-201ENST00000621046 635 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 AC112487.2-201ENST00000637950 304 ntBASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC140Q96MF4 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 AC023245.2-201ENST00000530760 2978 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 RBPJP6-201ENST00000411556 1431 ntBASIC5.09□□□□□ -1.59
CCDC140Q96MF4 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CCDC140Q96MF4 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 139 ms