Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 MIR4480-201ENST00000582492 71 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC020634.1-201ENST00000608701 549 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AL133243.1-201ENST00000614487 366 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 MIR6730-201ENST00000622213 67 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AC010435.1-201ENST00000623353 1177 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 AP001784.1-201ENST00000624107 428 ntBASIC4.42□□□□□ -1.7
VPS39Q96JC1 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
VPS39Q96JC1 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS39Q96JC1 DDX6P1-205ENST00000441966 1436 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS39Q96JC1 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS39Q96JC1 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 RNU1-15P-201ENST00000353977 144 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 RNU4-39P-201ENST00000362455 127 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 RN7SKP103-201ENST00000363848 320 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 AL035419.1-201ENST00000397037 564 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 RN7SKP106-201ENST00000410832 272 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 RPL31P45-201ENST00000419532 356 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AL360081.1-201ENST00000428299 555 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 FO393419.3-201ENST00000428741 282 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 NPM1P34-201ENST00000428821 893 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 AL132765.1-201ENST00000434165 553 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 UBE2V1P3-201ENST00000439651 417 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 MTCYBP21-201ENST00000443300 1113 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AP001781.1-201ENST00000530977 207 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AC005034.4-201ENST00000603612 899 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 AL392112.1-201ENST00000605115 829 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 MIR6891-201ENST00000618788 93 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 AC091953.3-201ENST00000623220 236 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS39Q96JC1 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS39Q96JC1 AC053481.2-202ENST00000582394 1500 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 AC012020.1-201ENST00000624541 1728 ntBASIC4.41□□□□□ -1.7
VPS39Q96JC1 EIF2AP4-201ENST00000424793 1781 ntBASIC4.4□□□□□ -1.7
VPS39Q96JC1 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.4□□□□□ -1.7
VPS39Q96JC1 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS39Q96JC1 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS39Q96JC1 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS39Q96JC1 XIAPP3-201ENST00000312918 795 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AL049697.2-201ENST00000403708 294 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 MIR1911-201ENST00000410783 80 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 RPS20P14-201ENST00000412545 360 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC004987.3-201ENST00000413879 771 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 AL139128.1-201ENST00000413921 941 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 PRELID3BP11-201ENST00000414230 479 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 MTCO3P4-201ENST00000419236 787 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 USP9YP9-201ENST00000429406 715 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 RPL35AP28-201ENST00000459730 331 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 RN7SL812P-201ENST00000493791 279 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC105233.1-201ENST00000498840 781 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS39Q96JC1 RN7SKP141-201ENST00000516167 338 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AP000919.1-202ENST00000581139 1264 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 RN7SL690P-201ENST00000582087 240 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC005255.1-201ENST00000593748 216 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC024940.4-201ENST00000605507 246 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC006946.3-201ENST00000609791 756 ntBASIC4.4□□□□□ -1.71
VPS39Q96JC1 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS39Q96JC1 AC105429.2-201ENST00000610567 517 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms