Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC053481.1-201ENST00000467217 306 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC092905.1-201ENST00000467527 949 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC090013.1-201ENST00000485147 480 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC106872.2-201ENST00000494303 480 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 IFITM8P-201ENST00000522529 394 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 HAUS1P3-201ENST00000523909 662 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 OR8K2P-201ENST00000524645 927 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 MIR4330-201ENST00000579077 105 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 CBX3P2-202ENST00000583365 535 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 MIR4715-201ENST00000584117 79 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AP001160.4-201ENST00000596971 382 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC104785.1-201ENST00000603220 588 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AL049844.2-201ENST00000604280 628 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC010201.1-201ENST00000605051 540 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC004775.1-201ENST00000607389 753 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 MIR6715B-201ENST00000637172 77 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SKA3Q8IX90 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC105074.1-201ENST00000623380 3095 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 AC006971.1-201ENST00000407916 4486 ntBASIC3.89□□□□□ -1.79
SKA3Q8IX90 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SKA3Q8IX90 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.89□□□□□ -1.79
SKA3Q8IX90 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
SKA3Q8IX90 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 Z73965.1-201ENST00000623412 2297 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SKA3Q8IX90 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC027287.1-201ENST00000553115 1453 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SKA3Q8IX90 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SKA3Q8IX90 RNA5SP307-201ENST00000362863 116 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SKA3Q8IX90 RNU1-44P-201ENST00000384453 163 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 RNU6-225P-201ENST00000384613 103 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 MIR3065-201ENST00000390137 79 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 RPL23AP59-201ENST00000399415 461 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 RPS4XP9-201ENST00000405151 780 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AL353692.2-201ENST00000407054 335 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AL356387.2-201ENST00000422272 243 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC245028.1-201ENST00000423259 256 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 DPY19L1P2-201ENST00000426647 915 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 RPS6P12-201ENST00000432491 726 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 ELOCP18-201ENST00000434209 337 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC006326.1-201ENST00000445465 787 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 EIF4A1P11-201ENST00000451239 222 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 VN1R32P-201ENST00000452234 905 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 MTND2P6-201ENST00000455337 1030 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 snoU13.1-201ENST00000459157 104 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC015795.1-201ENST00000513669 327 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC108471.1-201ENST00000513977 287 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC004923.2-201ENST00000529649 369 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC135178.6-201ENST00000605314 398 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC004825.2-201ENST00000616634 455 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC007546.2-201ENST00000623996 360 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 MFSD8-242ENST00000641690 4199 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AP000756.2-201ENST00000624168 2567 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC083899.2-201ENST00000423285 1376 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC017007.4-201ENST00000503353 1352 ntBASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.88□□□□□ -1.79
SKA3Q8IX90 AC025031.4-201ENST00000621248 3271 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
SKA3Q8IX90 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SKA3Q8IX90 BX005019.1-201ENST00000561881 1810 ntBASIC3.87□□□□□ -1.79
SKA3Q8IX90 AC008033.1-201ENST00000216407 1162 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms