Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 SNORA62-201ENST00000365493 153 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 AC233289.1-201ENST00000403700 508 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AL592291.1-201ENST00000403830 352 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 MTND4P22-201ENST00000413116 1169 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 TBCAP2-201ENST00000416175 326 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC119751.6-201ENST00000416712 186 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AF186996.5-201ENST00000418098 904 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 E2F6P2-201ENST00000420708 748 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.25□□□□□ -1.73
LMX1BO60663 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 VDAC1P6-201ENST00000430062 855 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 ETF1P3-201ENST00000430422 1160 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AL138787.1-202ENST00000437804 898 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 MTCYBP12-201ENST00000440559 1134 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 MTND1P29-201ENST00000448112 647 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC000111.2-201ENST00000448200 210 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 AL133217.1-201ENST00000450980 425 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.25□□□□□ -1.73
LMX1BO60663 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AL591473.1-201ENST00000464297 313 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC107015.1-201ENST00000466902 747 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 RN7SL385P-201ENST00000468873 276 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 RAP1BP2-201ENST00000478270 544 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC079203.1-201ENST00000487972 404 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.25□□□□□ -1.73
LMX1BO60663 COX6B1P5-201ENST00000509843 249 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 BTF3P13-201ENST00000513224 490 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 MRPS33P3-201ENST00000513456 322 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 OR7H2P-201ENST00000513483 306 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC4.25□□□□□ -1.73
LMX1BO60663 MTND4LP31-201ENST00000514859 294 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 RFPL4AP3-201ENST00000515267 345 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 RNA5SP392-201ENST00000516905 112 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.25□□□□□ -1.73
LMX1BO60663 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4.25□□□□□ -1.73
LMX1BO60663 AC010306.1-201ENST00000523223 1117 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.25□□□□□ -1.73
LMX1BO60663 AP003033.1-201ENST00000527244 415 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.25□□□□□ -1.73
LMX1BO60663 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.25□□□□□ -1.73
LMX1BO60663 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.25□□□□□ -1.73
LMX1BO60663 BGLT3-201ENST00000564523 994 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.25□□□□□ -1.73
LMX1BO60663 AL020997.3-201ENST00000602843 359 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC018638.7-201ENST00000605836 1114 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC011374.2-201ENST00000607135 526 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC009237.15-201ENST00000610252 501 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AL450489.1-201ENST00000612071 468 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.25□□□□□ -1.73
LMX1BO60663 AC090116.1-201ENST00000615679 446 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 OR8G7P-201ENST00000616658 848 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 CASC19-206ENST00000641028 1430 ntBASIC4.25□□□□□ -1.73
LMX1BO60663 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
LMX1BO60663 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.25□□□□□ -1.73
LMX1BO60663 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
LMX1BO60663 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.25□□□□□ -1.73
LMX1BO60663 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.25□□□□□ -1.73
LMX1BO60663 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
LMX1BO60663 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.24□□□□□ -1.73
LMX1BO60663 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 DDX18P5-201ENST00000534547 1306 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 AC010300.1-201ENST00000600671 5134 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 AC104454.1-201ENST00000421341 1401 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.24□□□□□ -1.73
LMX1BO60663 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
LMX1BO60663 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
LMX1BO60663 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LMX1BO60663 RNA5SP428-201ENST00000365129 132 ntBASIC4.24□□□□□ -1.73
LMX1BO60663 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms