Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Zfp264-201ENSMUST00000208656 1563 ntBASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Nkx6-1Q99MA9 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Gm25745-201ENSMUST00000174945 133 ntBASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nkx6-1Q99MA9 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Gm19439-201ENSMUST00000198195 2273 ntBASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nkx6-1Q99MA9 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 AC131586.3-201ENSMUST00000228355 1367 ntBASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 AC125311.2-201ENSMUST00000227477 1940 ntBASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Gm13418-201ENSMUST00000119097 944 ntBASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Gm24513-201ENSMUST00000174964 138 ntBASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Gm27397-201ENSMUST00000184997 107 ntBASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Nkx6-1Q99MA9 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Gm25990-201ENSMUST00000102440 86 ntBASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Gm14494-201ENSMUST00000118786 435 ntBASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Gm14822-201ENSMUST00000122247 291 ntBASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Gm7230-201ENSMUST00000173026 815 ntBASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 AC154222.1-201ENSMUST00000223882 475 ntBASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Nkx6-1Q99MA9 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 AC225888.1-201ENSMUST00000227184 728 ntBASIC15.49■□□□□ 0.07
Nkx6-1Q99MA9 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms