Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim47Q8C0E3 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Gm9103-201ENSMUST00000119371 405 ntBASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim47Q8C0E3 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim47Q8C0E3 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Gm17807-201ENSMUST00000186869 298 ntBASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Ighv6-1-201ENSMUST00000193612 343 ntBASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC18.34■□□□□ 0.53
Trim47Q8C0E3 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.33■□□□□ 0.53
Trim47Q8C0E3 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim47Q8C0E3 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Trim47Q8C0E3 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim47Q8C0E3 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim47Q8C0E3 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Trim47Q8C0E3 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Gm44487-201ENSMUST00000205145 325 ntBASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim47Q8C0E3 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim47Q8C0E3 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim47Q8C0E3 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim47Q8C0E3 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim47Q8C0E3 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim47Q8C0E3 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim47Q8C0E3 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms