Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC14.13□□□□□ -0.15
Col8a1Q00780 Auts2-212ENSMUST00000178555 309 ntBASIC14.13□□□□□ -0.15
Col8a1Q00780 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.13□□□□□ -0.15
Col8a1Q00780 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC14.13□□□□□ -0.15
Col8a1Q00780 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC14.13□□□□□ -0.15
Col8a1Q00780 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Col8a1Q00780 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col8a1Q00780 Phf7-203ENSMUST00000226565 1971 ntBASIC14.13□□□□□ -0.15
Col8a1Q00780 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC14.12□□□□□ -0.15
Col8a1Q00780 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Col8a1Q00780 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC14.12□□□□□ -0.15
Col8a1Q00780 Gm27397-201ENSMUST00000184997 107 ntBASIC14.12□□□□□ -0.15
Col8a1Q00780 Gm2756-201ENSMUST00000195851 400 ntBASIC14.12□□□□□ -0.15
Col8a1Q00780 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC14.12□□□□□ -0.15
Col8a1Q00780 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.12□□□□□ -0.15
Col8a1Q00780 Psmb5-202ENSMUST00000227257 622 ntBASIC14.12□□□□□ -0.15
Col8a1Q00780 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.12□□□□□ -0.15
Col8a1Q00780 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC14.12□□□□□ -0.15
Col8a1Q00780 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC14.12□□□□□ -0.15
Col8a1Q00780 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col8a1Q00780 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC14.11□□□□□ -0.15
Col8a1Q00780 Gm24513-201ENSMUST00000174964 138 ntBASIC14.11□□□□□ -0.15
Col8a1Q00780 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC14.11□□□□□ -0.15
Col8a1Q00780 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Col8a1Q00780 AC225888.1-201ENSMUST00000227184 728 ntBASIC14.11□□□□□ -0.15
Col8a1Q00780 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col8a1Q00780 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col8a1Q00780 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col8a1Q00780 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC14.1□□□□□ -0.15
Col8a1Q00780 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Col8a1Q00780 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col8a1Q00780 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Gm14494-201ENSMUST00000118786 435 ntBASIC14.1□□□□□ -0.15
Col8a1Q00780 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC14.1□□□□□ -0.15
Col8a1Q00780 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.1□□□□□ -0.15
Col8a1Q00780 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Col8a1Q00780 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC14.1□□□□□ -0.15
Col8a1Q00780 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Gm7856-201ENSMUST00000117514 1493 ntBASIC14.1□□□□□ -0.15
Col8a1Q00780 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col8a1Q00780 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Col8a1Q00780 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col8a1Q00780 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col8a1Q00780 Gm15165-201ENSMUST00000118140 502 ntBASIC14.09□□□□□ -0.15
Col8a1Q00780 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col8a1Q00780 Rprl3-201ENSMUST00000157400 290 ntBASIC14.09□□□□□ -0.15
Col8a1Q00780 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col8a1Q00780 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col8a1Q00780 Gm13830-205ENSMUST00000201195 1155 ntBASIC14.09□□□□□ -0.15
Col8a1Q00780 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Col8a1Q00780 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Col8a1Q00780 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col8a1Q00780 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col8a1Q00780 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Col8a1Q00780 AC123834.2-201ENSMUST00000224038 2340 ntBASIC14.09□□□□□ -0.15
Col8a1Q00780 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col8a1Q00780 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms