Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL451139.1-201ENST00000434718 346 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 VN1R54P-201ENST00000435210 1049 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC006466.1-201ENST00000438721 289 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 RPS26P2-201ENST00000440331 348 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 MTCO1P53-201ENST00000441633 699 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC099063.2-201ENST00000446360 662 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 SEPT14P24-201ENST00000447236 180 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 DNAJC19P8-201ENST00000452887 259 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 RPL10P17-201ENST00000453852 316 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 SBDSP1-204ENST00000453858 737 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC083982.1-201ENST00000485679 344 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 RNA5SP228-201ENST00000516232 133 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 OR7E13P-201ENST00000526052 910 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC023824.3-201ENST00000569003 562 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC015912.2-201ENST00000571053 181 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 MTND1P8-201ENST00000571424 950 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL160237.3-201ENST00000604114 1013 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC073387.2-201ENST00000604797 784 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 COX6CP4-201ENST00000605798 228 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.09□□□□□ -1.75
NKX3-1Q99801 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NKX3-1Q99801 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.09□□□□□ -1.76
NKX3-1Q99801 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
NKX3-1Q99801 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.09□□□□□ -1.76
NKX3-1Q99801 BX005019.1-201ENST00000561881 1810 ntBASIC4.09□□□□□ -1.76
NKX3-1Q99801 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
NKX3-1Q99801 SEC63P2-201ENST00000503863 1939 ntBASIC4.09□□□□□ -1.76
NKX3-1Q99801 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
NKX3-1Q99801 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.09□□□□□ -1.76
NKX3-1Q99801 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
NKX3-1Q99801 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
NKX3-1Q99801 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
NKX3-1Q99801 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
NKX3-1Q99801 MIR585-201ENST00000384887 94 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 U3.30-201ENST00000391308 210 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL021331.1-201ENST00000402817 582 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 RN7SKP167-201ENST00000411047 285 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 CBX1P4-201ENST00000439415 457 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 FHP1-201ENST00000442741 703 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 TPTE2P6-202ENST00000445572 1007 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL050341.1-201ENST00000447743 313 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL935212.3-201ENST00000450729 284 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC243772.1-201ENST00000451620 410 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 RPS3AP53-201ENST00000454716 778 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 RPL23AP12-201ENST00000467573 473 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 TRBV8-2-201ENST00000475637 270 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 METTL15P1-201ENST00000481421 1045 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 DEFB109F-201ENST00000491870 277 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AL035404.1-201ENST00000497982 568 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC010627.1-201ENST00000503819 1294 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC026414.1-201ENST00000504046 698 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC091868.1-201ENST00000508746 304 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.08□□□□□ -1.76
NKX3-1Q99801 AC068714.1-201ENST00000559623 800 ntBASIC4.08□□□□□ -1.76
NKX3-1Q99801 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 152.9 ms