Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL161909.1-201ENST00000397390 712 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC093578.1-201ENST00000415219 368 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 PDSS1P1-201ENST00000422953 1114 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC073335.1-201ENST00000427776 363 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AL121877.1-201ENST00000453704 622 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AF213884.1-201ENST00000488102 463 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.66□□□□□ -1.82
CHD3Q12873 AC025554.1-201ENST00000505641 188 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.66□□□□□ -1.82
CHD3Q12873 RNA5SP49-201ENST00000516450 115 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AP003730.1-201ENST00000524605 285 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.66□□□□□ -1.82
CHD3Q12873 MEG8-217ENST00000556637 924 ntTSL 5 BASIC3.66□□□□□ -1.82
CHD3Q12873 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.66□□□□□ -1.82
CHD3Q12873 MTND6P33-201ENST00000571794 183 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 MIR3944-201ENST00000581277 108 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC243756.2-201ENST00000618406 463 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.66□□□□□ -1.82
CHD3Q12873 AL139254.3-201ENST00000641097 674 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.66□□□□□ -1.82
CHD3Q12873 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 AC106871.1-201ENST00000568324 3102 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 AL929601.4-201ENST00000613011 1341 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 SNORA9-201ENST00000384215 133 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.66□□□□□ -1.82
CHD3Q12873 RPS23P10-201ENST00000416185 486 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.66□□□□□ -1.82
CHD3Q12873 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.66□□□□□ -1.82
CHD3Q12873 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.66□□□□□ -1.82
CHD3Q12873 AC025445.1-201ENST00000502728 300 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC010374.1-201ENST00000503762 1237 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 ATP1B1P1-201ENST00000509767 915 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 PPBPP1-201ENST00000510807 373 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 OR7E10P-201ENST00000526420 991 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
CHD3Q12873 AC053481.4-201ENST00000583164 216 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC107993.1-201ENST00000591343 684 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 AC113403.1-201ENST00000604910 193 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 MIR6875-201ENST00000617506 72 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.66□□□□□ -1.82
CHD3Q12873 AL161912.2-201ENST00000565707 3007 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.66□□□□□ -1.82
CHD3Q12873 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.66□□□□□ -1.82
CHD3Q12873 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
CHD3Q12873 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.82
CHD3Q12873 AC012020.1-201ENST00000624541 1728 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CHD3Q12873 RNA5SP36-201ENST00000410197 133 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 AL450992.3-201ENST00000413192 568 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.65□□□□□ -1.82
CHD3Q12873 RPS27AP16-201ENST00000492222 470 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 PRELID3BP7-201ENST00000503606 469 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 RPS27AP18-201ENST00000515536 459 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 SNORA74D-201ENST00000516404 141 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CHD3Q12873 AL121834.1-201ENST00000572284 509 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 AC018816.2-201ENST00000621460 353 ntBASIC3.65□□□□□ -1.82
CHD3Q12873 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
CHD3Q12873 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
CHD3Q12873 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CHD3Q12873 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.65□□□□□ -1.83
CHD3Q12873 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.65□□□□□ -1.83
CHD3Q12873 AC139713.2-215ENST00000641428 5037 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 RNU1-108P-201ENST00000362556 161 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.65□□□□□ -1.83
CHD3Q12873 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CHD3Q12873 AC004552.1-201ENST00000419089 348 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.65□□□□□ -1.83
CHD3Q12873 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.65□□□□□ -1.83
CHD3Q12873 UBE2V1P3-201ENST00000439651 417 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.65□□□□□ -1.83
CHD3Q12873 RPS26P3-201ENST00000470205 348 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 AC090543.2-201ENST00000483963 348 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 AC004057.1-201ENST00000485827 348 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC3.65□□□□□ -1.83
CHD3Q12873 KCTD9P2-201ENST00000512203 1013 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.65□□□□□ -1.83
CHD3Q12873 AC099522.1-202ENST00000514718 367 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 TRMT10BP1-201ENST00000519377 943 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.65□□□□□ -1.83
CHD3Q12873 AC008759.1-201ENST00000589783 983 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 AC104662.1-201ENST00000604448 511 ntBASIC3.65□□□□□ -1.83
CHD3Q12873 AL138721.1-201ENST00000616756 179 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms