Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.06□□□□□ -1.76
SDC1P18827 HMGB1P26-201ENST00000452520 628 ntBASIC4.06□□□□□ -1.76
SDC1P18827 FGF7P3-201ENST00000454645 303 ntBASIC4.06□□□□□ -1.76
SDC1P18827 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.06□□□□□ -1.76
SDC1P18827 RN7SL585P-201ENST00000470538 280 ntBASIC4.06□□□□□ -1.76
SDC1P18827 RPS27AP16-201ENST00000492222 470 ntBASIC4.06□□□□□ -1.76
SDC1P18827 RPL23AP72-201ENST00000492447 435 ntBASIC4.06□□□□□ -1.76
SDC1P18827 BNIP3P41-201ENST00000503774 571 ntBASIC4.06□□□□□ -1.76
SDC1P18827 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.06□□□□□ -1.76
SDC1P18827 MTND3P24-201ENST00000506306 329 ntBASIC4.06□□□□□ -1.76
SDC1P18827 AC111000.3-201ENST00000508057 576 ntBASIC4.06□□□□□ -1.76
SDC1P18827 RNA5SP228-201ENST00000516232 133 ntBASIC4.06□□□□□ -1.76
SDC1P18827 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.06□□□□□ -1.76
SDC1P18827 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SDC1P18827 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.06□□□□□ -1.76
SDC1P18827 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.06□□□□□ -1.76
SDC1P18827 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.06□□□□□ -1.76
SDC1P18827 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.06□□□□□ -1.76
SDC1P18827 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.06□□□□□ -1.76
SDC1P18827 AC100827.5-201ENST00000615883 426 ntBASIC4.06□□□□□ -1.76
SDC1P18827 MIR1264-201ENST00000616374 69 ntBASIC4.06□□□□□ -1.76
SDC1P18827 AL445363.3-201ENST00000623080 671 ntBASIC4.06□□□□□ -1.76
SDC1P18827 AC008785.1-201ENST00000624475 456 ntBASIC4.06□□□□□ -1.76
SDC1P18827 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.06□□□□□ -1.76
SDC1P18827 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
SDC1P18827 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
SDC1P18827 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
SDC1P18827 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
SDC1P18827 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SDC1P18827 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 ZNF90P1-201ENST00000480493 1951 ntBASIC4.05□□□□□ -1.76
SDC1P18827 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.05□□□□□ -1.76
SDC1P18827 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 MTND4P26-201ENST00000415971 1359 ntBASIC4.05□□□□□ -1.76
SDC1P18827 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
SDC1P18827 AC090017.1-201ENST00000548612 1779 ntBASIC4.05□□□□□ -1.76
SDC1P18827 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 RNU6-178P-201ENST00000384631 104 ntBASIC4.05□□□□□ -1.76
SDC1P18827 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.05□□□□□ -1.76
SDC1P18827 AL133270.1-201ENST00000402635 279 ntBASIC4.05□□□□□ -1.76
SDC1P18827 RPS16P5-201ENST00000406501 404 ntBASIC4.05□□□□□ -1.76
SDC1P18827 MIR1179-201ENST00000408703 91 ntBASIC4.05□□□□□ -1.76
SDC1P18827 RNA5SP498-201ENST00000411342 120 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AL590139.1-201ENST00000416267 400 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 AC048351.1-201ENST00000420064 602 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 AL157831.1-201ENST00000426134 473 ntBASIC4.05□□□□□ -1.76
SDC1P18827 MTCO3P21-201ENST00000430791 643 ntBASIC4.05□□□□□ -1.76
SDC1P18827 RPL17P35-201ENST00000432217 549 ntBASIC4.05□□□□□ -1.76
SDC1P18827 RPL23AP89-201ENST00000439324 255 ntBASIC4.05□□□□□ -1.76
SDC1P18827 MTND6P18-201ENST00000439477 513 ntBASIC4.05□□□□□ -1.76
SDC1P18827 FHP1-201ENST00000442741 703 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 RPL23AP23-201ENST00000452590 471 ntBASIC4.05□□□□□ -1.76
SDC1P18827 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
SDC1P18827 RN7SL610P-201ENST00000463845 291 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AC006517.1-201ENST00000480485 328 ntBASIC4.05□□□□□ -1.76
SDC1P18827 SYT14P1-201ENST00000481459 721 ntBASIC4.05□□□□□ -1.76
SDC1P18827 RPL23AP73-201ENST00000492507 471 ntBASIC4.05□□□□□ -1.76
SDC1P18827 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 AC025554.1-201ENST00000505641 188 ntBASIC4.05□□□□□ -1.76
SDC1P18827 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.05□□□□□ -1.76
SDC1P18827 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.05□□□□□ -1.76
SDC1P18827 AC017037.1-201ENST00000508460 471 ntBASIC4.05□□□□□ -1.76
SDC1P18827 PGBD4P4-201ENST00000509673 613 ntBASIC4.05□□□□□ -1.76
SDC1P18827 RNU6-1102P-201ENST00000516149 96 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 UBTFL9-201ENST00000534504 1148 ntBASIC4.05□□□□□ -1.76
SDC1P18827 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.05□□□□□ -1.76
SDC1P18827 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.05□□□□□ -1.76
SDC1P18827 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.05□□□□□ -1.76
SDC1P18827 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
SDC1P18827 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.05□□□□□ -1.76
SDC1P18827 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.05□□□□□ -1.76
SDC1P18827 AC008638.3-201ENST00000603341 463 ntBASIC4.05□□□□□ -1.76
SDC1P18827 SUMO2P14-201ENST00000604488 293 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AL512506.1-201ENST00000613918 449 ntBASIC4.05□□□□□ -1.76
SDC1P18827 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AC006213.5-201ENST00000619673 288 ntBASIC4.05□□□□□ -1.76
SDC1P18827 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.05□□□□□ -1.76
SDC1P18827 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.05□□□□□ -1.76
SDC1P18827 FRG1DP-201ENST00000635586 771 ntBASIC4.05□□□□□ -1.76
SDC1P18827 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SDC1P18827 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.05□□□□□ -1.76
SDC1P18827 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.05□□□□□ -1.76
SDC1P18827 AC025031.4-201ENST00000621248 3271 ntBASIC4.05□□□□□ -1.76
SDC1P18827 DDX18P3-201ENST00000404856 2007 ntBASIC4.05□□□□□ -1.76
SDC1P18827 MFSD8-216ENST00000641147 4009 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms