Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC017083.1-201ENST00000428093 483 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AC073069.1-201ENST00000428657 441 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 BMS1P19-201ENST00000433925 393 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 RPS26P40-201ENST00000435209 294 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 USP9YP7-201ENST00000436723 430 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA3P55318 USP9YP32-201ENST00000452432 430 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AC018638.3-201ENST00000461273 132 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC3.06□□□□□ -1.92
FOXA3P55318 RPL7P16-201ENST00000479738 738 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.06□□□□□ -1.92
FOXA3P55318 RPSAP50-201ENST00000481955 852 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC011005.3-201ENST00000491624 395 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 NIPA2P2-201ENST00000496376 1083 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC3.06□□□□□ -1.92
FOXA3P55318 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.06□□□□□ -1.92
FOXA3P55318 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC106872.4-201ENST00000510050 523 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA3P55318 NDUFB4P9-201ENST00000511646 388 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.06□□□□□ -1.92
FOXA3P55318 SDAD1P1-202ENST00000524156 2051 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC022968.1-201ENST00000567372 442 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AC099489.2-201ENST00000574976 260 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AC012146.2-201ENST00000576545 416 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC023043.4-201ENST00000612081 449 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC009318.3-201ENST00000616916 503 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AL356274.1-201ENST00000617064 410 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 uc_338.13-201ENST00000618243 179 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AC004943.3-201ENST00000624116 600 ntBASIC3.06□□□□□ -1.92
FOXA3P55318 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
FOXA3P55318 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
FOXA3P55318 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.06□□□□□ -1.92
FOXA3P55318 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
FOXA3P55318 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.06□□□□□ -1.92
FOXA3P55318 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA3P55318 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA3P55318 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 RN7SKP149-201ENST00000363008 344 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA3P55318 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA3P55318 Z98941.1-201ENST00000407764 100 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 RN7SKP106-201ENST00000410832 272 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 FAR2P2-201ENST00000413041 594 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA3P55318 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA3P55318 RPL7AP25-201ENST00000423357 805 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 AL157831.1-201ENST00000426134 473 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 FTH1P16-201ENST00000435241 552 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA3P55318 AC092809.1-201ENST00000441469 474 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.05□□□□□ -1.92
FOXA3P55318 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA3P55318 RPL12P20-201ENST00000475538 479 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA3P55318 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.05□□□□□ -1.92
FOXA3P55318 AC004069.2-201ENST00000505438 1114 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA3P55318 AC026726.1-201ENST00000512859 601 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 IGKV1-32-201ENST00000519290 311 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 AC068714.1-201ENST00000559623 800 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA3P55318 AL133247.2-201ENST00000603236 482 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 AC140479.6-201ENST00000633535 357 ntBASIC3.05□□□□□ -1.92
FOXA3P55318 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.05□□□□□ -1.92
FOXA3P55318 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA3P55318 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA3P55318 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
FOXA3P55318 AC007342.7-201ENST00000624610 2337 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 AC132825.1-201ENST00000463573 2247 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA3P55318 MFSD8-220ENST00000641243 1422 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
FOXA3P55318 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA3P55318 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA3P55318 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA3P55318 OR5P1P-201ENST00000299512 925 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 MIR331-201ENST00000362302 94 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 U3.15-201ENST00000365398 212 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 RNA5SP105-201ENST00000391123 113 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA3P55318 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.04□□□□□ -1.92
FOXA3P55318 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms