Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 UQCRHP4-201ENST00000471686 272 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.7□□□□□ -1.66
CLDN3O15551 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.7□□□□□ -1.66
CLDN3O15551 RN7SKP122-201ENST00000515923 296 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 RNA5SP49-201ENST00000516450 115 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 IGKV2D-10-201ENST00000520194 281 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.7□□□□□ -1.66
CLDN3O15551 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.7□□□□□ -1.66
CLDN3O15551 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.7□□□□□ -1.66
CLDN3O15551 AL138721.1-201ENST00000616756 179 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 AC007546.1-201ENST00000619452 559 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 LINC00216-201ENST00000623548 1126 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 MIR3653-201ENST00000625572 110 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CLDN3O15551 AC055839.1-201ENST00000634467 498 ntBASIC4.7□□□□□ -1.66
CLDN3O15551 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CLDN3O15551 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CLDN3O15551 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CLDN3O15551 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CLDN3O15551 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.69□□□□□ -1.66
CLDN3O15551 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CLDN3O15551 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.69□□□□□ -1.66
CLDN3O15551 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.69□□□□□ -1.66
CLDN3O15551 MFSD13B-201ENST00000420133 1290 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 DPY19L1P2-201ENST00000426647 915 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.69□□□□□ -1.66
CLDN3O15551 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.69□□□□□ -1.66
CLDN3O15551 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 AC105137.1-201ENST00000484355 562 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 AC041039.1-201ENST00000485656 536 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 RN7SL691P-201ENST00000494487 301 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 AC010627.1-201ENST00000503819 1294 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 AL592156.1-201ENST00000508758 304 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.69□□□□□ -1.66
CLDN3O15551 AC008958.1-201ENST00000511047 682 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 RNA5SP73-201ENST00000516744 108 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 AC138701.1-201ENST00000524329 714 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.69□□□□□ -1.66
CLDN3O15551 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.69□□□□□ -1.66
CLDN3O15551 TVP23BP1-201ENST00000557500 617 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 RN7SL176P-201ENST00000580352 264 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 MIR3939-201ENST00000582614 106 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 ARF4P1-201ENST00000605447 541 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 AC239803.2-201ENST00000610161 430 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 MIR6716-201ENST00000613413 80 ntBASIC4.69□□□□□ -1.66
CLDN3O15551 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.69□□□□□ -1.66
CLDN3O15551 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CLDN3O15551 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CLDN3O15551 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CLDN3O15551 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.69□□□□□ -1.66
CLDN3O15551 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CLDN3O15551 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CLDN3O15551 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLDN3O15551 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC009229.4-201ENST00000623854 1947 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 OR52B1P-201ENST00000316506 909 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC067945.1-201ENST00000342609 618 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CLDN3O15551 RNU1-14P-201ENST00000362759 152 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 AC068538.1-201ENST00000376856 336 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLDN3O15551 AL049693.1-201ENST00000402760 611 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLDN3O15551 RNA5SP36-201ENST00000410197 133 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 RN7SKP235-201ENST00000410662 305 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC234779.1-201ENST00000425910 285 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 NIPA2P1-201ENST00000426223 976 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.68□□□□□ -1.66
CLDN3O15551 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC245517.2-201ENST00000442890 346 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 NUTF2P3-201ENST00000448540 384 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.68□□□□□ -1.66
CLDN3O15551 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLDN3O15551 AC005912.1-201ENST00000495392 255 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC108475.1-201ENST00000507880 950 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.68□□□□□ -1.66
CLDN3O15551 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLDN3O15551 KCTD9P2-201ENST00000512203 1013 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CLDN3O15551 RNA5SP360-201ENST00000516555 118 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 AC008694.2-201ENST00000517591 306 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.68□□□□□ -1.66
CLDN3O15551 AL109766.1-201ENST00000555080 552 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC090948.2-201ENST00000607363 564 ntBASIC4.68□□□□□ -1.66
CLDN3O15551 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.68□□□□□ -1.66
CLDN3O15551 AC135803.1-201ENST00000608748 565 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms